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Kolinski, Andrzej
245  results:
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1

Integrative modeling of diverse protein-peptide systems usi..:

Puławski, Wojciech ; Koliński, Andrzej ; Koliński, Michał.
PLOS Computational Biology.  19 (2023)  7 - p. e1011275 , 2023
Link: https://doi.org/10.1371/..
 
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2

Protein–Protein Docking with Large-Scale Backbone Flexibili..:

Kurcinski, Mateusz ; Kmiecik, Sebastian ; Zalewski, Mateusz.
International Journal of Molecular Sciences.  22 (2021)  14 - p. 7341 , 2021
Link: https://doi.org/10.3390/..
 
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3

Computational reconstruction of atomistic protein structure..:

Badaczewska-Dawid, Aleksandra E. ; Kolinski, Andrzej ; Kmiecik, Sebastian
Computational and Structural Biotechnology Journal.  18 (2020)  - p. 162-176 , 2020
Link: https://doi.org/10.1016/..
 
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4

Modeling of Disordered Protein Structures Using Monte Carlo..:

Ciemny, Maciej Pawel ; Badaczewska-Dawid, Aleksandra Elzbieta ; Pikuzinska, Monika..
International Journal of Molecular Sciences.  20 (2019)  3 - p. 606 , 2019
Link: https://doi.org/10.3390/..
 
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5

Flexible docking of peptides to proteins using CABS‐dock:

Kurcinski, Mateusz ; Badaczewska‐Dawid, Aleksandra ; Kolinski, Michal..
Protein Science.  29 (2019)  1 - p. 211-222 , 2019
Link: https://doi.org/10.1002/..
 
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6

CABS-dock standalone: a toolbox for flexible protein–peptid..:

Kurcinski, Mateusz ; Pawel Ciemny, Maciej ; Oleniecki, Tymoteusz...
Bioinformatics.  35 (2019)  20 - p. 4170-4172 , 2019
Link: https://doi.org/10.1093/..
 
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7

CABS-flex 2.0: a web server for fast simulations of flexibi..:

Kuriata, Aleksander ; Gierut, Aleksandra Maria ; Oleniecki, Tymoteusz...
Nucleic Acids Research.  46 (2018)  W1 - p. W338-W343 , 2018
Link: https://doi.org/10.1093/..
 
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8

Protein–peptide docking: opportunities and challenges:

Ciemny, Maciej ; Kurcinski, Mateusz ; Kamel, Karol...
Drug Discovery Today.  23 (2018)  8 - p. 1530-1537 , 2018
Link: https://doi.org/10.1016/..
 
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9

Kinetics and mechanical stability of the fibril state contr..:

Kouza, Maksim ; Co, Nguyen Truong ; Li, Mai Suan...
The Journal of Chemical Physics.  148 (2018)  21 - p. , 2018
Link: https://doi.org/10.1063/..
 
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10

Protein Structure Prediction Using Coarse-Grained Models:

, In: Springer Series on Bio- and Neurosystems; Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes,
Blaszczyk, Maciej ; Gront, Dominik ; Kmiecik, Sebastian... - p. 27-59 , 2018
Link: https://doi.org/10.1007/..
 
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11

Protein–peptide docking using CABS-dock and contact informa..:

Blaszczyk, Maciej ; Ciemny, Maciej Pawel ; Kolinski, Andrzej..
Briefings in Bioinformatics.  20 (2018)  6 - p. 2299-2305 , 2018
Link: https://doi.org/10.1093/..
 
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12

Modeling of Protein Structural Flexibility and Large-Scale ..:

Kmiecik, Sebastian ; Kouza, Maksim ; Badaczewska-Dawid, Aleksandra E...
International Journal of Molecular Sciences.  19 (2018)  11 - p. 3496 , 2018
Link: https://doi.org/10.3390/..
 
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13

Explicit-Solvent All-Atom Molecular Dynamics of Peptide Agg..:

, In: Springer Series on Bio- and Neurosystems; Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes,
Kouza, Maksim ; Kolinski, Andrzej ; Buhimschi, Irina Alexandra. - p. 541-558 , 2018
Link: https://doi.org/10.1007/..
 
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14

CABS-flex standalone: a simulation environment for fast mod..:

Kurcinski, Mateusz ; Oleniecki, Tymoteusz ; Ciemny, Maciej Pawel...
Bioinformatics.  35 (2018)  4 - p. 694-695 , 2018
Link: https://doi.org/10.1093/..
 
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15

Protein Dynamics Simulations Using Coarse-Grained Models:

, In: Springer Series on Bio- and Neurosystems; Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes,
Kmiecik, Sebastian ; Wabik, Jacek ; Kolinski, Michal.. - p. 61-87 , 2018
Link: https://doi.org/10.1007/..
 
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