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Lotfollahi, Mohammad
209  results:
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1

The future of rapid and automated single-cell data analysis..:

Lotfollahi, Mohammad ; Yuhan Hao ; Theis, Fabian J..
Cell.  187 (2024)  10 - p. 2343-2358 , 2024
Link: https://doi.org/10.1016/..
 
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2

Multi-modal generative modeling for joint analysis of singl..:

Drost, Felix ; An, Yang ; Bonafonte-Pardàs, Irene...
Nature Communications.  15 (2024)  1 - p. , 2024
Link: https://doi.org/10.1038/..
 
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3

Deep learning in spatially resolved transcriptomics: a comp..:

Zahedi, Roxana ; Ghamsari, Reza ; Argha, Ahmadreza...
Briefings in Bioinformatics.  25 (2024)  2 - p. , 2024
Link: https://doi.org/10.1093/..
 
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4

Deep generative modeling of transcriptional dynamics for RN..:

Gayoso, Adam ; Weiler, Philipp ; Lotfollahi, Mohammad...
Nature Methods.  21 (2023)  1 - p. 50-59 , 2023
Link: https://doi.org/10.1038/..
 
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5

Population-level integration of single-cell datasets enable..:

De Donno, Carlo ; Hediyeh-Zadeh, Soroor ; Moinfar, Amir Ali...
Nature Methods.  20 (2023)  11 - p. 1683-1692 , 2023
Link: https://doi.org/10.1038/..
 
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6

The scverse project provides a computational ecosystem for ..:

Virshup, Isaac ; Bredikhin, Danila ; Heumos, Lukas...
Nature Biotechnology.  , 2023
Link: https://doi.org/10.1038/..
 
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7

Best practices for single-cell analysis across modalities:

Heumos, Lukas ; Schaar, Anna C. ; Lance, Christopher...
Nature Reviews Genetics.  24 (2023)  8 - p. 550-572 , 2023
Link: https://doi.org/10.1038/..
 
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8

Single-cell reference mapping to construct and extend cell-..:

Michielsen, Lieke ; Lotfollahi, Mohammad ; Strobl, Daniel...
NAR Genomics and Bioinformatics.  5 (2023)  3 - p. , 2023
Link: https://doi.org/10.1093/..
 
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9

Predicting cellular responses to complex perturbations in h..:

Lotfollahi, Mohammad ; Klimovskaia Susmelj, Anna ; De Donno, Carlo...
Molecular Systems Biology.  19 (2023)  6 - p. , 2023
Link: https://doi.org/10.15252..
 
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10

Single-cell RNA sequencing uncovers heterogeneous transcrip..:

Feriz, Adib Miraki ; Khosrojerdi, Arezou ; Lotfollahi, Mohammad...
Heliyon.  9 (2023)  5 - p. e15694 , 2023
Link: https://doi.org/10.1016/..
 
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11

Biologically informed deep learning to query gene programs ..:

Lotfollahi, Mohammad ; Rybakov, Sergei ; Hrovatin, Karin...
Nature Cell Biology.  , 2023
Link: https://doi.org/10.1038/..
 
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12

Modeling single-cell perturbations using deep learning:

Lotfollahi, Mohammad , 2022
Link: http://nbn-resolving.de/..
 
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13

A Python library for probabilistic analysis of single-cell ..:

Gayoso, Adam ; Lopez, Romain ; Xing, Galen...
Nature Biotechnology.  40 (2022)  2 - p. 163-166 , 2022
Link: https://doi.org/10.1038/..
 
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14

Squidpy: a scalable framework for spatial omics analysis:

Palla, Giovanni ; Spitzer, Hannah ; Klein, Michal...
Nature Methods.  19 (2022)  2 - p. 171-178 , 2022
Link: https://doi.org/10.1038/..
 
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15

Mapping single-cell data to reference atlases by transfer l..:

Lotfollahi, Mohammad ; Naghipourfar, Mohsen ; Luecken, Malte D....
Nature Biotechnology.  40 (2021)  1 - p. 121-130 , 2021
Link: https://doi.org/10.1038/..
 
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