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1
AlphaKnot 2.0: a web server for the visualization of protei..:
Rubach, Pawel ; Sikora, Maciej ; Jarmolinska, Aleksandra I..
Nucleic Acids Research. 52 (2024) W1 - p. W187-W193 , 2024
Nucleic Acids Research. 52 (2024) W1 - p. W187-W193 , 2024
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2
Slipknotted and unknotted monovalent cation-proton antiport..:
Zayats, Vasilina ; Perlinska, Agata P. ; Jarmolinska, Aleksandra I....
PLOS Computational Biology. 17 (2021) 10 - p. e1009502 , 2021
PLOS Computational Biology. 17 (2021) 10 - p. e1009502 , 2021
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3
Seven evolutionary scenarios found within the transporters:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Seven_evolutionary_scenarios_found_within_the_transporters_/18394169. , 2021
https://figshare.com/articles/figure/Seven_evolutionary_scenarios_found_within_the_transporters_/18394169. , 2021
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4
Structure of the slipknotted transporter KpCitS:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Structure_of_the_slipknotted_transporter_KpCitS_/18394160. , 2021
https://figshare.com/articles/figure/Structure_of_the_slipknotted_transporter_KpCitS_/18394160. , 2021
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5
Phylogenetic tree from MrBayes:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/dataset/Phylogenetic_tree_from_MrBayes_/18394151. , 2021
https://figshare.com/articles/dataset/Phylogenetic_tree_from_MrBayes_/18394151. , 2021
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6
Sequence logos of both slipknotted and unknotted protein fa..:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Sequence_logos_of_both_slipknotted_and_unknotted_protein_families_/18394109. , 2021
https://figshare.com/articles/figure/Sequence_logos_of_both_slipknotted_and_unknotted_protein_families_/18394109. , 2021
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7
Projection of the phylogenetic tree of all 17 families stud..:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Projection_of_the_phylogenetic_tree_of_all_17_families_studied_here_on_the_Tree_of_Life_/18394133. , 2021
https://figshare.com/articles/figure/Projection_of_the_phylogenetic_tree_of_all_17_families_studied_here_on_the_Tree_of_Life_/18394133. , 2021
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8
Bayesian phylogenetic tree 4:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Bayesian_phylogenetic_tree_4_/18394127. , 2021
https://figshare.com/articles/figure/Bayesian_phylogenetic_tree_4_/18394127. , 2021
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9
Multiple sequence alignment of the domains profiles:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Multiple_sequence_alignment_of_the_domains_profiles_/18394118. , 2021
https://figshare.com/articles/figure/Multiple_sequence_alignment_of_the_domains_profiles_/18394118. , 2021
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10
Methods:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/journal_contribution/Methods_/18394142. , 2021
https://figshare.com/articles/journal_contribution/Methods_/18394142. , 2021
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11
Identified structural differences between the slipknotted a..:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Identified_structural_differences_between_the_slipknotted_and_unknotted_proteins_/18394163. , 2021
https://figshare.com/articles/figure/Identified_structural_differences_between_the_slipknotted_and_unknotted_proteins_/18394163. , 2021
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12
Bayesian phylogenetic tree 2:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Bayesian_phylogenetic_tree_2_/18394121. , 2021
https://figshare.com/articles/figure/Bayesian_phylogenetic_tree_2_/18394121. , 2021
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13
The linkers connecting two domains in slipknotted and unkno..:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/The_linkers_connecting_two_domains_in_slipknotted_and_unknotted_structures_/18394112. , 2021
https://figshare.com/articles/figure/The_linkers_connecting_two_domains_in_slipknotted_and_unknotted_structures_/18394112. , 2021
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14
Multiple sequence alignment of domain sequences:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/dataset/Multiple_sequence_alignment_of_domain_sequences_/18394145. , 2021
https://figshare.com/articles/dataset/Multiple_sequence_alignment_of_domain_sequences_/18394145. , 2021
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15
Comparison of unaligned full-length sequences in CLANS:
Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Comparison_of_unaligned_full-length_sequences_in_CLANS_/18394136. , 2021
https://figshare.com/articles/figure/Comparison_of_unaligned_full-length_sequences_in_CLANS_/18394136. , 2021