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Jarmolinska, Aleksandra I
36  results:
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1

AlphaKnot 2.0: a web server for the visualization of protei..:

Rubach, Pawel ; Sikora, Maciej ; Jarmolinska, Aleksandra I..
Nucleic Acids Research.  52 (2024)  W1 - p. W187-W193 , 2024
Link: https://doi.org/10.1093/..
 
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2

Slipknotted and unknotted monovalent cation-proton antiport..:

Zayats, Vasilina ; Perlinska, Agata P. ; Jarmolinska, Aleksandra I....
PLOS Computational Biology.  17 (2021)  10 - p. e1009502 , 2021
Link: https://doi.org/10.1371/..
 
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3

Seven evolutionary scenarios found within the transporters:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Seven_evolutionary_scenarios_found_within_the_transporters_/18394169.  , 2021
Link: https://doi.org/10.1371/..
 
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4

Structure of the slipknotted transporter KpCitS:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Structure_of_the_slipknotted_transporter_KpCitS_/18394160.  , 2021
Link: https://doi.org/10.1371/..
 
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5

Phylogenetic tree from MrBayes:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/dataset/Phylogenetic_tree_from_MrBayes_/18394151.  , 2021
Link: https://doi.org/10.1371/..
 
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6

Sequence logos of both slipknotted and unknotted protein fa..:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Sequence_logos_of_both_slipknotted_and_unknotted_protein_families_/18394109.  , 2021
Link: https://doi.org/10.1371/..
 
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7

Projection of the phylogenetic tree of all 17 families stud..:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Projection_of_the_phylogenetic_tree_of_all_17_families_studied_here_on_the_Tree_of_Life_/18394133.  , 2021
Link: https://doi.org/10.1371/..
 
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8

Bayesian phylogenetic tree 4:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Bayesian_phylogenetic_tree_4_/18394127.  , 2021
Link: https://doi.org/10.1371/..
 
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9

Multiple sequence alignment of the domains profiles:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Multiple_sequence_alignment_of_the_domains_profiles_/18394118.  , 2021
Link: https://doi.org/10.1371/..
 
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10

Methods:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/journal_contribution/Methods_/18394142.  , 2021
Link: https://doi.org/10.1371/..
 
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11

Identified structural differences between the slipknotted a..:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Identified_structural_differences_between_the_slipknotted_and_unknotted_proteins_/18394163.  , 2021
Link: https://doi.org/10.1371/..
 
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12

Bayesian phylogenetic tree 2:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Bayesian_phylogenetic_tree_2_/18394121.  , 2021
Link: https://doi.org/10.1371/..
 
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13

The linkers connecting two domains in slipknotted and unkno..:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/The_linkers_connecting_two_domains_in_slipknotted_and_unknotted_structures_/18394112.  , 2021
Link: https://doi.org/10.1371/..
 
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14

Multiple sequence alignment of domain sequences:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/dataset/Multiple_sequence_alignment_of_domain_sequences_/18394145.  , 2021
Link: https://doi.org/10.1371/..
 
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15

Comparison of unaligned full-length sequences in CLANS:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Comparison_of_unaligned_full-length_sequences_in_CLANS_/18394136.  , 2021
Link: https://doi.org/10.1371/..
 
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