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Kyrpides, Nikos
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1

Metatranscriptomes of two biological soil crust types from ..:

Nguyen, Thuy M. ; Pombubpa, Nuttapon ; Huntemann, Marcel...
Microbiology Resource Announcements.  13 (2024)  2 - p. , 2024
Link: https://doi.org/10.1128/..
 
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2

Visualizing metagenomic and metatranscriptomic data: A comp..:

Aplakidou, Eleni ; Vergoulidis, Nikolaos ; Chasapi, Maria...
Computational and Structural Biotechnology Journal.  23 (2024)  - p. 2011-2033 , 2024
Link: https://doi.org/10.1016/..
 
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3

Whole community shotgun metagenomes of two biological soil ..:

Nguyen, Thuy M. ; Pombubpa, Nuttapon ; Huntemann, Marcel...
Microbiology Resource Announcements.  13 (2024)  3 - p. , 2024
Link: https://doi.org/10.1128/..
 
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4

A global atlas of soil viruses reveals unexplored biodivers..:

Graham, Emily B. ; Camargo, Antonio Pedro ; Wu, Ruonan...
Nature Microbiology.  9 (2024)  7 - p. 1873-1883 , 2024
Link: https://doi.org/10.1038/..
 
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5

Metatranscriptomes of two biological soil crust types from ..:

Nguyen, Thuy M ; Pombubpa, Nuttapon ; Huntemann, Marcel...
qt1r28d3h1.  , 2024
Link: https://escholarship.org..
 
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6

IMG/PR: a database of plasmids from genomes and metagenomes..:

Camargo, Antonio Pedro ; Call, Lee ; Roux, Simon...
Nucleic Acids Research.  52 (2023)  D1 - p. D164-D173 , 2023
Link: https://doi.org/10.1093/..
 
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7

NMPFamsDB: a database of novel protein families from microb..:

Baltoumas, Fotis A ; Karatzas, Evangelos ; Liu, Sirui...
Nucleic Acids Research.  52 (2023)  D1 - p. D502-D512 , 2023
Link: https://doi.org/10.1093/..
 
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8

Standardized naming of microbiome samples in Genomes OnLine..:

Mukherjee, Supratim ; Ovchinnikova, Galina ; Stamatis, Dimitri...
Database.  2023 (2023)  - p. , 2023
Link: https://doi.org/10.1093/..
 
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9

Exploring microbial functional biodiversity at the protein ..:

Baltoumas, Fotis A. ; Karatzas, Evangelos ; Paez-Espino, David...
Frontiers in Bioinformatics.  3 (2023)  - p. , 2023
Link: https://doi.org/10.3389/..
 
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10

Mining metatranscriptomes reveals a vast world of viroid-li..:

Lee, Benjamin D. ; Neri, Uri ; Roux, Simon...
Cell.  186 (2023)  3 - p. 646-661.e4 , 2023
Link: https://doi.org/10.1016/..
 
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11

Comparative Genomics Using the Integrated Microbial Genomes..:

Seshadri, Rekha ; Kyrpides, Nikos C. ; Ivanova, Natalia N.
Journal of the Indian Institute of Science.  103 (2023)  3 - p. 877-890 , 2023
Link: https://doi.org/10.1007/..
 
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12

Identification of over ten thousand candidate structured RN..:

Fremin, Brayon J. ; Bhatt, Ami S. ; Kyrpides, Nikos C.
Computational and Structural Biotechnology Journal.  21 (2023)  - p. 5630-5639 , 2023
Link: https://doi.org/10.1016/..
 
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13

Bioinformatics Analysis Tools for Studying Microbiomes at t..:

Mukherjee, Supratim ; Palaniappan, Krishnaveni ; Seshadri, Rekha...
Journal of the Indian Institute of Science.  103 (2023)  3 - p. 857-875 , 2023
Link: https://doi.org/10.1007/..
 
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14

Identification of mobile genetic elements with geNomad:

Camargo, Antonio Pedro ; Roux, Simon ; Schulz, Frederik...
Nature Biotechnology.  42 (2023)  8 - p. 1303-1312 , 2023
Link: https://doi.org/10.1038/..
 
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15

A simple, dual direct expression plasmid system in prokaryo..:

Murakami, Manabu ; Murakami, Agnieszka M ; Yonekura, Manabu...
PNAS Nexus.  2 (2023)  5 - p. , 2023
Link: https://doi.org/10.1093/..
 
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