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2
Interpreting tree ensemble machine learning models with end..:
Ruaud, Albane ; Pfister, Niklas ; Ley, Ruth E...
PLOS Computational Biology. 18 (2022) 12 - p. e1010714 , 2022
PLOS Computational Biology. 18 (2022) 12 - p. e1010714 , 2022
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3
Predetermined decision rules to generate the response varia..:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/dataset/Predetermined_decision_rules_to_generate_the_response_variable_from_the_simulated_datasets_/21727650. , 2022
https://figshare.com/articles/dataset/Predetermined_decision_rules_to_generate_the_response_variable_from_the_simulated_datasets_/21727650. , 2022
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4
endoR captures interactions predictive of an artificial phe..:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/figure/endoR_captures_interactions_predictive_of_an_artificial_phenotype_from_a_random_forest_fitted_on_real_metagenomes_/21727632. , 2022
https://figshare.com/articles/figure/endoR_captures_interactions_predictive_of_an_artificial_phenotype_from_a_random_forest_fitted_on_real_metagenomes_/21727632. , 2022
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5
Supplementary Methods describing the data, the evaluation o..:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/journal_contribution/Supplementary_Methods_describing_the_data_the_evaluation_of_endoR_and_the_analysis_of_metagenomes_/21727524. , 2022
https://figshare.com/articles/journal_contribution/Supplementary_Methods_describing_the_data_the_evaluation_of_endoR_and_the_analysis_of_metagenomes_/21727524. , 2022
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6
Average random forest Cohen's κ and network metrics from th..:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/dataset/Average_random_forest_Cohen_s_i_i_and_network_metrics_from_the_artificial_phenotypes_/21727617. , 2022
https://figshare.com/articles/dataset/Average_random_forest_Cohen_s_i_i_and_network_metrics_from_the_artificial_phenotypes_/21727617. , 2022
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7
endoR performs as well as state-of-the-art methods at ident..:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/journal_contribution/endoR_performs_as_well_as_state-of-the-art_methods_at_identifying_variables_and_pairs_of_variables_predictive_of_a_target_from_fully_simulated_data_/21727560. , 2022
https://figshare.com/articles/journal_contribution/endoR_performs_as_well_as_state-of-the-art_methods_at_identifying_variables_and_pairs_of_variables_predictive_of_a_target_from_fully_simulated_data_/21727560. , 2022
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8
Supplementary Results:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/journal_contribution/Supplementary_Results_/21727527. , 2022
https://figshare.com/articles/journal_contribution/Supplementary_Results_/21727527. , 2022
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9
Importance and influence of single variables extracted from..:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/dataset/Importance_and_influence_of_single_variables_extracted_from_the_stable_decision_ensemble_in_S6_Table_The_taxonomy_is_also_given_121_/21727608. , 2022
https://figshare.com/articles/dataset/Importance_and_influence_of_single_variables_extracted_from_the_stable_decision_ensemble_in_S6_Table_The_taxonomy_is_also_given_121_/21727608. , 2022
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10
The accuracy of endoR increases with the accuracy of input ..:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/journal_contribution/The_accuracy_of_endoR_increases_with_the_accuracy_of_input_models_/21727548. , 2022
https://figshare.com/articles/journal_contribution/The_accuracy_of_endoR_increases_with_the_accuracy_of_input_models_/21727548. , 2022
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12
endoR recovers ground truth network from perfect predictive..:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/journal_contribution/endoR_recovers_ground_truth_network_from_perfect_predictive_models_/21727539. , 2022
https://figshare.com/articles/journal_contribution/endoR_recovers_ground_truth_network_from_perfect_predictive_models_/21727539. , 2022
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13
endoR recapitulates previous findings on differences in gut..:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/figure/endoR_recapitulates_previous_findings_on_differences_in_gut_microbiomes_between_healthy_individuals_and_patients_diagnosed_with_cirrhosis_/21727641. , 2022
https://figshare.com/articles/figure/endoR_recapitulates_previous_findings_on_differences_in_gut_microbiomes_between_healthy_individuals_and_patients_diagnosed_with_cirrhosis_/21727641. , 2022
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14
Predictive performance of models trained to predict the pre..:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/dataset/Predictive_performance_of_models_trained_to_predict_the_presence_of_i_Methanobacteriaceae_i_from_metagenomes_/21727599. , 2022
https://figshare.com/articles/dataset/Predictive_performance_of_models_trained_to_predict_the_presence_of_i_Methanobacteriaceae_i_from_metagenomes_/21727599. , 2022
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15
Model selection and fitting for predicting the presence/abs..:
Albane Ruaud (14259687) ; Niklas Pfister (5522843) ; Ruth E. Ley (9233814).
https://figshare.com/articles/journal_contribution/Model_selection_and_fitting_for_predicting_the_presence_absence_of_i_Methanobacteriaceae_i_/21727533. , 2022
https://figshare.com/articles/journal_contribution/Model_selection_and_fitting_for_predicting_the_presence_absence_of_i_Methanobacteriaceae_i_/21727533. , 2022