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Zgarbová, Marie
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1

Multistate B- to A- transition in protein-DNA Binding – How..:

Jurečka, Petr ; Zgarbová, Marie ; Černý, Filip.
Journal of Biomolecular Structure and Dynamics.  , 2024
Link: https://doi.org/10.1080/..
 
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2

Multistate B- to A- transition in protein-DNA Binding – How..:

Petr Jurečka ; Marie Zgarbová ; Filip Černý.
https://figshare.com/articles/journal_contribution/Multistate_B-_to_A-_transition_in_protein-DNA_Binding_How_well_is_it_described_by_current_AMBER_force_fields_/25415279.  , 2024
Link: https://doi.org/10.6084/..
 
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3

Assessing the Current State of Amber Force Field Modificati..:

Love, Olivia ; Galindo-Murillo, Rodrigo ; Zgarbová, Marie...
Journal of Chemical Theory and Computation.  19 (2023)  13 - p. 4299-4307 , 2023
Link: https://doi.org/10.1021/..
 
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4

Probabilistic Interpretation of NMR J-Couplings Determines ..:

Fukal, Jiří ; Zgarbová, Marie ; Jurečka, Petr..
Journal of Chemical Theory and Computation.  18 (2022)  11 - p. 6989-6999 , 2022
Link: https://doi.org/10.1021/..
 
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5

The Ad‐MD method to calculate NMR shift including effects d..:

Fukal, Jiří ; Buděšínský, Miloš ; Páv, Ondřej...
Journal of Computational Chemistry.  43 (2021)  2 - p. 132-143 , 2021
Link: https://doi.org/10.1002/..
 
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6

Z-DNA as a Touchstone for Additive Empirical Force Fields a..:

Zgarbová, Marie ; Šponer, Jiří ; Jurečka, Petr
Journal of Chemical Theory and Computation.  17 (2021)  10 - p. 6292-6301 , 2021
Link: https://doi.org/10.1021/..
 
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7

Z‑DNA as a Touchstone for Additive Empirical Force Fields a..:

Marie Zgarbová (1274427) ; Jiří Šponer (1274424) ; Petr Jurečka (1274433)
https://figshare.com/articles/journal_contribution/Z_DNA_as_a_Touchstone_for_Additive_Empirical_Force_Fields_and_a_Refinement_of_the_Alpha_Gamma_DNA_Torsions_for_AMBER/16695388.  , 2021
Link: https://doi.org/10.1021/..
 
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8

Correction to "Improving the Performance of the Amber RNA F..:

Kührová, Petra ; Mlýnský, Vojtěch ; Zgarbová, Marie...
Journal of Chemical Theory and Computation.  16 (2019)  1 - p. 818-819 , 2019
Link: https://doi.org/10.1021/..
 
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9

Improving the Performance of the Amber RNA Force Field by T..:

Kührová, Petra ; Mlýnský, Vojtěch ; Zgarbová, Marie...
Journal of Chemical Theory and Computation.  15 (2019)  5 - p. 3288-3305 , 2019
Link: https://doi.org/10.1021/..
 
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10

Noncanonical α/γ Backbone Conformations in RNA and the Accu..:

Zgarbová, Marie ; Jurečka, Petr ; Banáš, Pavel...
The Journal of Physical Chemistry B.  121 (2017)  11 - p. 2420-2433 , 2017
Link: https://doi.org/10.1021/..
 
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11

A- to B-DNA Transition in AMBER Force Fields and Its Coupli..:

Zgarbová, Marie ; Jurečka, Petr ; Šponer, Jiří.
Journal of Chemical Theory and Computation.  14 (2017)  1 - p. 319-328 , 2017
Link: https://doi.org/10.1021/..
 
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12

Influence of BII Backbone Substates on DNA Twist: A Unified..:

Zgarbová, Marie ; Jurečka, Petr ; Lankaš, Filip...
Journal of Chemical Information and Modeling.  57 (2017)  2 - p. 275-287 , 2017
Link: https://doi.org/10.1021/..
 
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13

Assessing the Current State of Amber Force Field Modificati..:

Galindo-Murillo, Rodrigo ; Robertson, James C. ; Zgarbová, Marie...
Journal of Chemical Theory and Computation.  12 (2016)  8 - p. 4114-4127 , 2016
Link: https://doi.org/10.1021/..
 
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14

How to understand atomistic molecular dynamics simulations ..:

Šponer, Jiří ; Krepl, Miroslav ; Banáš, Pavel...
WIREs RNA.  8 (2016)  3 - p. , 2016
Link: https://doi.org/10.1002/..
 
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15

Transferability and additivity of dihedral parameters in po..:

Zgarbová, Marie ; Rosnik, Andreana M. ; Luque, F. Javier..
Journal of Computational Chemistry.  36 (2015)  25 - p. 1874-1884 , 2015
Link: https://doi.org/10.1002/..
 
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