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Zgarbová, Marie
38
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Online (38)
Mediatypes
Articles (Online) (34)
OpenAccess-fulltext (4)
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1
Multistate B- to A- transition in protein-DNA Binding – How..:
Jurečka, Petr
;
Zgarbová, Marie
;
Černý, Filip
.
Journal of Biomolecular Structure and Dynamics. , 2024
Link:
https://doi.org/10.1080/..
?
2
Multistate B- to A- transition in protein-DNA Binding – How..:
Petr Jurečka
;
Marie Zgarbová
;
Filip Černý
.
https://figshare.com/articles/journal_contribution/Multistate_B-_to_A-_transition_in_protein-DNA_Binding_How_well_is_it_described_by_current_AMBER_force_fields_/25415279. , 2024
Link:
https://doi.org/10.6084/..
?
3
Assessing the Current State of Amber Force Field Modificati..:
Love, Olivia
;
Galindo-Murillo, Rodrigo
;
Zgarbová, Marie
...
Journal of Chemical Theory and Computation. 19 (2023) 13 - p. 4299-4307 , 2023
Link:
https://doi.org/10.1021/..
?
4
Probabilistic Interpretation of NMR J-Couplings Determines ..:
Fukal, Jiří
;
Zgarbová, Marie
;
Jurečka, Petr
..
Journal of Chemical Theory and Computation. 18 (2022) 11 - p. 6989-6999 , 2022
Link:
https://doi.org/10.1021/..
?
5
The Ad‐MD method to calculate NMR shift including effects d..:
Fukal, Jiří
;
Buděšínský, Miloš
;
Páv, Ondřej
...
Journal of Computational Chemistry. 43 (2021) 2 - p. 132-143 , 2021
Link:
https://doi.org/10.1002/..
?
6
Z-DNA as a Touchstone for Additive Empirical Force Fields a..:
Zgarbová, Marie
;
Šponer, Jiří
;
Jurečka, Petr
Journal of Chemical Theory and Computation. 17 (2021) 10 - p. 6292-6301 , 2021
Link:
https://doi.org/10.1021/..
?
7
Z‑DNA as a Touchstone for Additive Empirical Force Fields a..:
Marie Zgarbová (1274427)
;
Jiří Šponer (1274424)
;
Petr Jurečka (1274433)
https://figshare.com/articles/journal_contribution/Z_DNA_as_a_Touchstone_for_Additive_Empirical_Force_Fields_and_a_Refinement_of_the_Alpha_Gamma_DNA_Torsions_for_AMBER/16695388. , 2021
Link:
https://doi.org/10.1021/..
?
8
Correction to "Improving the Performance of the Amber RNA F..:
Kührová, Petra
;
Mlýnský, Vojtěch
;
Zgarbová, Marie
...
Journal of Chemical Theory and Computation. 16 (2019) 1 - p. 818-819 , 2019
Link:
https://doi.org/10.1021/..
?
9
Improving the Performance of the Amber RNA Force Field by T..:
Kührová, Petra
;
Mlýnský, Vojtěch
;
Zgarbová, Marie
...
Journal of Chemical Theory and Computation. 15 (2019) 5 - p. 3288-3305 , 2019
Link:
https://doi.org/10.1021/..
?
10
Noncanonical α/γ Backbone Conformations in RNA and the Accu..:
Zgarbová, Marie
;
Jurečka, Petr
;
Banáš, Pavel
...
The Journal of Physical Chemistry B. 121 (2017) 11 - p. 2420-2433 , 2017
Link:
https://doi.org/10.1021/..
?
11
A- to B-DNA Transition in AMBER Force Fields and Its Coupli..:
Zgarbová, Marie
;
Jurečka, Petr
;
Šponer, Jiří
.
Journal of Chemical Theory and Computation. 14 (2017) 1 - p. 319-328 , 2017
Link:
https://doi.org/10.1021/..
?
12
Influence of BII Backbone Substates on DNA Twist: A Unified..:
Zgarbová, Marie
;
Jurečka, Petr
;
Lankaš, Filip
...
Journal of Chemical Information and Modeling. 57 (2017) 2 - p. 275-287 , 2017
Link:
https://doi.org/10.1021/..
?
13
Assessing the Current State of Amber Force Field Modificati..:
Galindo-Murillo, Rodrigo
;
Robertson, James C.
;
Zgarbová, Marie
...
Journal of Chemical Theory and Computation. 12 (2016) 8 - p. 4114-4127 , 2016
Link:
https://doi.org/10.1021/..
?
14
How to understand atomistic molecular dynamics simulations ..:
Šponer, Jiří
;
Krepl, Miroslav
;
Banáš, Pavel
...
WIREs RNA. 8 (2016) 3 - p. , 2016
Link:
https://doi.org/10.1002/..
?
15
Transferability and additivity of dihedral parameters in po..:
Zgarbová, Marie
;
Rosnik, Andreana M.
;
Luque, F. Javier
..
Journal of Computational Chemistry. 36 (2015) 25 - p. 1874-1884 , 2015
Link:
https://doi.org/10.1002/..
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