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Brunk, Elizabeth
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1

Machine Learning of Three-Dimensional Protein Structures to..:

Shukla, Kriti ; Idanwekhai, Kelvin ; Naradikian, Martin...
Journal of Chemical Information and Modeling.  64 (2024)  13 - p. 5328-5343 , 2024
Link: https://doi.org/10.1021/..
 
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2

A standardized protocol for sample preparation for scanning..:

A. Madren, Jillann ; Chen, Jingting ; Dennis, William...
BioTechniques.  , 2024
Link: https://doi.org/10.1080/..
 
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3

Advances in the Management of Early-Stage Triple-Negative B..:

Bhardwaj, Prarthna V. ; Wang, Yue ; Brunk, Elizabeth..
International Journal of Molecular Sciences.  24 (2023)  15 - p. 12478 , 2023
Link: https://doi.org/10.3390/..
 
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4

NAD metabolic dependency in cancer is shaped by gene amplif..:

Chowdhry, Sudhir ; Zanca, Ciro ; Rajkumar, Utkrisht...
Nature.  569 (2019)  7757 - p. 570-575 , 2019
Link: https://doi.org/10.1038/..
 
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5

Adaptive laboratory evolution resolves energy depletion to ..:

McCloskey, Douglas ; Xu, Sibei ; Sandberg, Troy E....
Metabolic Engineering.  48 (2018)  - p. 233-242 , 2018
Link: https://doi.org/10.1016/..
 
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6

Growth Adaptation of gnd and sdhCB Escherichia coli Deletio..:

McCloskey, Douglas ; Xu, Sibei ; Sandberg, Troy E....
Frontiers in Microbiology.  9 (2018)  - p. , 2018
Link: https://doi.org/10.3389/..
 
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7

Evolution of gene knockout strains of E. coli reveal regula..:

McCloskey, Douglas ; Xu, Sibei ; Sandberg, Troy E....
Nature Communications.  9 (2018)  1 - p. , 2018
Link: https://doi.org/10.1038/..
 
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8

Characterizing posttranslational modifications in prokaryot..:

Brunk, Elizabeth ; Chang, Roger L. ; Xia, Jing...
Proceedings of the National Academy of Sciences of the United States of America.  115 (2018)  43 - p. 11096-11101 , 2018
Link: https://www.jstor.org/st..
 
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9

Adaptation to the coupling of glycolysis to toxic methylgly..:

McCloskey, Douglas ; Xu, Sibei ; Sandberg, Troy E....
Metabolic Engineering.  48 (2018)  - p. 82-93 , 2018
Link: https://doi.org/10.1016/..
 
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10

Characterizing posttranslational modifications in prokaryot..:

Brunk, Elizabeth ; Chang, Roger L. ; Xia, Jing...
Proceedings of the National Academy of Sciences.  115 (2018)  43 - p. 11096-11101 , 2018
Link: https://doi.org/10.1073/..
 
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11

Recon3D enables a three-dimensional view of gene variation ..:

Brunk, Elizabeth ; Sahoo, Swagatika ; Zielinski, Daniel C...
Nature Biotechnology.  36 (2018)  3 - p. 272-281 , 2018
Link: https://doi.org/10.1038/..
 
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12

Mapping genetic variations to three-dimensional protein str..:

Glusman, Gustavo ; Rose, Peter W. ; Prlić, Andreas...
Genome Medicine.  9 (2017)  1 - p. , 2017
Link: https://doi.org/10.1186/..
 
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13

iML1515, a knowledgebase that computes Escherichia coli tra..:

Monk, Jonathan M ; Lloyd, Colton J ; Brunk, Elizabeth...
Nature Biotechnology.  35 (2017)  10 - p. 904-908 , 2017
Link: https://doi.org/10.1038/..
 
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14

Machine learning in computational biology to accelerate hig..:

Sastry, Anand ; Monk, Jonathan ; Tegel, Hanna...
Bioinformatics.  33 (2017)  16 - p. 2487-2495 , 2017
Link: https://doi.org/10.1093/..
 
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15

A Multi-scale Computational Platform to Mechanistically Ass..:

Mih, Nathan ; Brunk, Elizabeth ; Bordbar, Aarash..
PLOS Computational Biology.  12 (2016)  7 - p. e1005039 , 2016
Link: https://doi.org/10.1371/..
 
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