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A single cell Arabidopsis root atlas reveals developmental ..:
Shahan, Rachel ; Hsu, Che-Wei ; Nolan, Trevor M...
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9014886/. , 2022
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9014886/. , 2022
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2
Developmental single-cell transcriptomics in the Lytechinus..:
Massri, Abdull J ; Greenstreet, Laura ; Afanassiev, Anton...
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8502253/. , 2021
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8502253/. , 2021
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3
Optimal transport analysis reveals trajectories in steady-s..:
Stephen Zhang ; Anton Afanassiev ; Laura Greenstreet..
https://doi.org/10.1371/journal.pcbi.1009466. , 2021
https://doi.org/10.1371/journal.pcbi.1009466. , 2021
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4
Non-conservative simulation:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Non-conservative_simulation_/17123834. , 2021
https://figshare.com/articles/figure/Non-conservative_simulation_/17123834. , 2021
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5
Effect of parameter choices on inference for potential-driv..:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Effect_of_parameter_choices_on_inference_for_potential-driven_system_/17123828. , 2021
https://figshare.com/articles/figure/Effect_of_parameter_choices_on_inference_for_potential-driven_system_/17123828. , 2021
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6
Lineage annotation compared to cell fate probabilities for ..:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Lineage_annotation_compared_to_cell_fate_probabilities_for_both_StationaryOT_methods_PBA_and_CellRank_/17123807. , 2021
https://figshare.com/articles/figure/Lineage_annotation_compared_to_cell_fate_probabilities_for_both_StationaryOT_methods_PBA_and_CellRank_/17123807. , 2021
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7
Inferred dynamics in the space of paths for non-conservativ..:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Inferred_dynamics_in_the_space_of_paths_for_non-conservative_system_/17123837. , 2021
https://figshare.com/articles/figure/Inferred_dynamics_in_the_space_of_paths_for_non-conservative_system_/17123837. , 2021
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8
Output of StationaryOT on full atlas dataset:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Output_of_StationaryOT_on_full_atlas_dataset_/17123855. , 2021
https://figshare.com/articles/figure/Output_of_StationaryOT_on_full_atlas_dataset_/17123855. , 2021
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9
Conceptual illustration of inference problem:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Conceptual_illustration_of_inference_problem_/17123816. , 2021
https://figshare.com/articles/figure/Conceptual_illustration_of_inference_problem_/17123816. , 2021
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10
Arabidopsis atlas cell annotations and StationaryOT output:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/_i_Arabidopsis_i_atlas_cell_annotations_and_StationaryOT_output_/17123846. , 2021
https://figshare.com/articles/figure/_i_Arabidopsis_i_atlas_cell_annotations_and_StationaryOT_output_/17123846. , 2021
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11
Arabidopsis cell cycle signature genes:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/dataset/Arabidopsis_cell_cycle_signature_genes_/17123798. , 2021
https://figshare.com/articles/dataset/Arabidopsis_cell_cycle_signature_genes_/17123798. , 2021
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12
S4 Fig -:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/S4_Fig_-/17123810. , 2021
https://figshare.com/articles/figure/S4_Fig_-/17123810. , 2021
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13
Effect of parameter choices on inference for non-conservati..:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Effect_of_parameter_choices_on_inference_for_non-conservative_system_/17123840. , 2021
https://figshare.com/articles/figure/Effect_of_parameter_choices_on_inference_for_non-conservative_system_/17123840. , 2021
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14
Accuracy of inferred dynamics for potential-driven system:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Accuracy_of_inferred_dynamics_for_potential-driven_system_/17123825. , 2021
https://figshare.com/articles/figure/Accuracy_of_inferred_dynamics_for_potential-driven_system_/17123825. , 2021
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15
Potential-driven simulation:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Potential-driven_simulation_/17123822. , 2021
https://figshare.com/articles/figure/Potential-driven_simulation_/17123822. , 2021