E-LIB Suche - Ergebnisse für: Amemiya, Haley M.

1

Distinct heterochromatin‐like domains promote transcription..:

Amemiya, Haley M ; Goss, Thomas J ; Nye, Taylor M...
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8804932/. , 2021

Link: http://www.ncbi.nlm.nih...

2

Nucleoid-associated proteins shape chromatin structure and ..:

Amemiya, Haley M ; Schroeder, Jeremy ; Freddolino, Peter L
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8632127/. , 2021

Link: http://www.ncbi.nlm.nih...

3

The ENCODE Blacklist: Identification of Problematic Regions..:

Amemiya, Haley M ; Kundaje, Anshul ; Boyle, Alan P
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6597582/. , 2019

Link: http://www.ncbi.nlm.nih...

4

Ribosomal DNA replication time coordinates completion of ge..:

Elizabeth X. Kwan ; Gina M. Alvino ; Kelsey L. Lynch...
http://www.sciencedirect.com/science/article/pii/S2211124723001729. , 2023

Link: https://doi.org/10.1016/..

5

Correction: Dynamic landscape of protein occupancy across t..:

Peter L Freddolino ; Haley M Amemiya ; Thomas J Goss.
https://doi.org/10.1371/journal.pbio.3001557. , 2022

Link: https://doi.org/10.1371/..

6

rDNA Copy Number Variants Are Frequent Passenger Mutations ..:

Elizabeth X. Kwan ; Xiaobin S. Wang ; Haley M. Amemiya..
http://g3journal.org/lookup/doi/10.1534/g3.116.030296. , 2016

Link: https://doi.org/10.1534/..

7

Average occupancies for TFs with known/characterized bindin..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/figure/Average_occupancies_for_TFs_with_known_characterized_binding_sites_/14849555. , 2021

Link: https://doi.org/10.1371/..

8

Identification of RNA polymerase vs. non-RNA polymerase pro..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/figure/Identification_of_RNA_polymerase_vs_non-RNA_polymerase_protein_occupancy_/14849561. , 2021

Link: https://doi.org/10.1371/..

9

Additional information on the recovery of known TFBS profil..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/journal_contribution/Additional_information_on_the_recovery_of_known_TFBS_profiles_from_IPOD-HR_data_and_inferred_motifs_/14849549. , 2021

Link: https://doi.org/10.1371/..

10

Effects of rifampin treatment on protein occupancy of a hig..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/figure/Effects_of_rifampin_treatment_on_protein_occupancy_of_a_highly_transcribed_region_/14849567. , 2021

Link: https://doi.org/10.1371/..

11

List of IPOD-HR experiments performed over the course of th..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/dataset/List_of_IPOD-HR_experiments_performed_over_the_course_of_the_study_including_concise_names_used_to_refer_to_each_experiment_in_the_remainder_of_the_text_included_as_a_separate_file_/14849591. , 2021

Link: https://doi.org/10.1371/..

12

GFF file giving the FIMO hits on the E . coli MG1655 genome..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/dataset/GFF_file_giving_the_FIMO_hits_on_the_i_E_i_i_coli_i_MG1655_genome_for_all_newly_inferred_motifs_described_here_/14849609. , 2021

Link: https://doi.org/10.1371/..

13

Comparisons of the distributions of robust z-scores (withou..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/journal_contribution/Comparisons_of_the_distributions_of_robust_z-scores_without_log_scaling_observed_on_different_genomic_regions_in_the_WT_rich_condition_see_also_cumulative_distributions_of_the_log_sub_10_sub_p_statistic_in_Fig_2E_/14849576. , 2021

Link: https://doi.org/10.1371/..

14

Table showing the GO terms that are enriched in the potenti..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/dataset/Table_showing_the_GO_terms_that_are_enriched_in_the_potential_regulon_of_each_newly_inferred_regulatory_motif_/14849615. , 2021

Link: https://doi.org/10.1371/..

15

Experimental identification of the protein bound to a novel..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/figure/Experimental_identification_of_the_protein_bound_to_a_novel_occupancy_peak_upstream_of_the_i_sdaC_i_promoter_/14849639. , 2021

Link: https://doi.org/10.1371/..