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1

Comparative genomics and evolutionary analysis of Lactococc..:

Francés-Cuesta, Carlos ; Ansari, Iván ; Fernández-Garayzábal, José Francisco..
Microbial Genomics. 8 (2022) 2 - p. , 2022

Link: https://doi.org/10.1099/..

2

One is not enough: On the effects of reference genome for t..:

Valiente-Mullor, Carlos ; Beamud, Beatriz ; Ansari, Iván...
PLOS Computational Biology. 17 (2021) 1 - p. e1008678 , 2021

Link: https://doi.org/10.1371/..

3

Comparative genomics and evolutionary analysis of Lactococc..:

Francés-Cuesta, Carlos ; Ansari, Iván ; Fernández-Garayzábal, José Francisco..
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8942021/. , 2022

Link: http://www.ncbi.nlm.nih...

4

Comparative genomics and evolutionary analysis of Lactococc..:

Francés-Cuesta, Carlos ; Ansari, Iván ; Fernández-Garayzábal, José Francisco..
#PLACEHOLDER_PARENT_METADATA_VALUE#. , 2022

Link: http://hdl.handle.net/10..

5

One is not enough: On the effects of reference genome for t..:

Carlos Valiente-Mullor ; Beatriz Beamud ; Iván Ansari...
https://doi.org/10.1371/journal.pcbi.1008678. , 2021

Link: https://doi.org/10.1371/..

6

Proportion of significant (P<0.05) comparisons depending on..:

Carlos Valiente-Mullor (10042112) ; Beatriz Beamud (10042115) ; Iván Ansari (10042118)...
https://figshare.com/articles/dataset/Proportion_of_significant_P_0_05_comparisons_depending_on_reference_choice_/13652873. , 2021

Link: https://doi.org/10.1371/..

7

Impact of reference choice on phylogenetic trees of L . pne..:

Carlos Valiente-Mullor (10042112) ; Beatriz Beamud (10042115) ; Iván Ansari (10042118)...
https://figshare.com/articles/figure/Impact_of_reference_choice_on_phylogenetic_trees_of_i_L_i_i_pneumophila_i_/13652855. , 2021

Link: https://doi.org/10.1371/..

8

'Phylogenetic trees per reference and species:

Carlos Valiente-Mullor (10042112) ; Beatriz Beamud (10042115) ; Iván Ansari (10042118)...
https://figshare.com/articles/dataset/_Phylogenetic_trees_per_reference_and_species_/13652831. , 2021

Link: https://doi.org/10.1371/..

9

ANI (%) calculated between the selected reference genomes:

Carlos Valiente-Mullor (10042112) ; Beatriz Beamud (10042115) ; Iván Ansari (10042118)...
https://figshare.com/articles/dataset/ANI_calculated_between_the_selected_reference_genomes_/13652813. , 2021

Link: https://doi.org/10.1371/..

10

Comparison of Robinson-Foulds (RF) and matching clusters (M..:

Carlos Valiente-Mullor (10042112) ; Beatriz Beamud (10042115) ; Iván Ansari (10042118)...
https://figshare.com/articles/figure/Comparison_of_Robinson-Foulds_RF_and_matching_clusters_MC_normalized_distances_calculated_between_trees_from_the_same_species_/13652849. , 2021

Link: https://doi.org/10.1371/..

11

RF and MC distances:

Carlos Valiente-Mullor (10042112) ; Beatriz Beamud (10042115) ; Iván Ansari (10042118)...
https://figshare.com/articles/dataset/RF_and_MC_distances_/13652822. , 2021

Link: https://doi.org/10.1371/..

12

Core genome trees of the complete whole-genome sequences do..:

Carlos Valiente-Mullor (10042112) ; Beatriz Beamud (10042115) ; Iván Ansari (10042118)...
https://figshare.com/articles/journal_contribution/Core_genome_trees_of_the_complete_whole-genome_sequences_downloaded_from_GenBank_/13652804. , 2021

Link: https://doi.org/10.1371/..

13

Impact of reference choice on phylogenetic trees of S . mar..:

Carlos Valiente-Mullor (10042112) ; Beatriz Beamud (10042115) ; Iván Ansari (10042118)...
https://figshare.com/articles/figure/Impact_of_reference_choice_on_phylogenetic_trees_of_i_S_i_i_marcescens_i_/13652864. , 2021

Link: https://doi.org/10.1371/..

14

Distribution of proportion of mapped reads depending on ref..:

Carlos Valiente-Mullor (10042112) ; Beatriz Beamud (10042115) ; Iván Ansari (10042118)...
https://figshare.com/articles/figure/Distribution_of_proportion_of_mapped_reads_depending_on_reference_choice_/13652837. , 2021

Link: https://doi.org/10.1371/..

15

Isolates (short-read sequence data) selected for mapping:

Carlos Valiente-Mullor (10042112) ; Beatriz Beamud (10042115) ; Iván Ansari (10042118)...
https://figshare.com/articles/dataset/Isolates_short-read_sequence_data_selected_for_mapping_/13652810. , 2021

Link: https://doi.org/10.1371/..

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