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Arabidopsis atlas cell annotations and StationaryOT output:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/_i_Arabidopsis_i_atlas_cell_annotations_and_StationaryOT_output_/17123846. , 2021
https://figshare.com/articles/figure/_i_Arabidopsis_i_atlas_cell_annotations_and_StationaryOT_output_/17123846. , 2021
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Lineage annotation compared to cell fate probabilities for ..:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Lineage_annotation_compared_to_cell_fate_probabilities_for_both_StationaryOT_methods_PBA_and_CellRank_/17123807. , 2021
https://figshare.com/articles/figure/Lineage_annotation_compared_to_cell_fate_probabilities_for_both_StationaryOT_methods_PBA_and_CellRank_/17123807. , 2021
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Inferred dynamics in the space of paths for non-conservativ..:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Inferred_dynamics_in_the_space_of_paths_for_non-conservative_system_/17123837. , 2021
https://figshare.com/articles/figure/Inferred_dynamics_in_the_space_of_paths_for_non-conservative_system_/17123837. , 2021
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Effect of parameter choices on inference for potential-driv..:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Effect_of_parameter_choices_on_inference_for_potential-driven_system_/17123828. , 2021
https://figshare.com/articles/figure/Effect_of_parameter_choices_on_inference_for_potential-driven_system_/17123828. , 2021
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Non-conservative simulation:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Non-conservative_simulation_/17123834. , 2021
https://figshare.com/articles/figure/Non-conservative_simulation_/17123834. , 2021
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Conceptual illustration of inference problem:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Conceptual_illustration_of_inference_problem_/17123816. , 2021
https://figshare.com/articles/figure/Conceptual_illustration_of_inference_problem_/17123816. , 2021
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Arabidopsis cell cycle signature genes:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/dataset/Arabidopsis_cell_cycle_signature_genes_/17123798. , 2021
https://figshare.com/articles/dataset/Arabidopsis_cell_cycle_signature_genes_/17123798. , 2021
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Output of StationaryOT on full atlas dataset:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Output_of_StationaryOT_on_full_atlas_dataset_/17123855. , 2021
https://figshare.com/articles/figure/Output_of_StationaryOT_on_full_atlas_dataset_/17123855. , 2021
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Comparison of StationaryOT performance to other methods:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Comparison_of_StationaryOT_performance_to_other_methods_/17123849. , 2021
https://figshare.com/articles/figure/Comparison_of_StationaryOT_performance_to_other_methods_/17123849. , 2021
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All four methods poorly matched the annotation for maturati..:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/All_four_methods_poorly_matched_the_annotation_for_maturation_procambium_cells_see_Fig_12_/17123801. , 2021
https://figshare.com/articles/figure/All_four_methods_poorly_matched_the_annotation_for_maturation_procambium_cells_see_Fig_12_/17123801. , 2021
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S4 Fig -:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/S4_Fig_-/17123810. , 2021
https://figshare.com/articles/figure/S4_Fig_-/17123810. , 2021
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Inferred dynamics in the space of paths for potential-drive..:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Inferred_dynamics_in_the_space_of_paths_for_potential-driven_system_/17123831. , 2021
https://figshare.com/articles/figure/Inferred_dynamics_in_the_space_of_paths_for_potential-driven_system_/17123831. , 2021
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Potential-driven simulation:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Potential-driven_simulation_/17123822. , 2021
https://figshare.com/articles/figure/Potential-driven_simulation_/17123822. , 2021
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Effect of parameter choices on inference for non-conservati..:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Effect_of_parameter_choices_on_inference_for_non-conservative_system_/17123840. , 2021
https://figshare.com/articles/figure/Effect_of_parameter_choices_on_inference_for_non-conservative_system_/17123840. , 2021
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Accuracy of inferred dynamics for potential-driven system:
Stephen Zhang (11790899) ; Anton Afanassiev (11790902) ; Laura Greenstreet (11790905)..
https://figshare.com/articles/figure/Accuracy_of_inferred_dynamics_for_potential-driven_system_/17123825. , 2021
https://figshare.com/articles/figure/Accuracy_of_inferred_dynamics_for_potential-driven_system_/17123825. , 2021
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