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Charles G Danko
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1

Precision run-on sequencing (PRO-seq) for microbiome transc..:

Vill, Albert C. ; Rice, Edward J. ; De Vlaminck, Iwijn..
Nature Microbiology.  9 (2024)  1 - p. 241-250 , 2024
Link: https://doi.org/10.1038/..
 
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2

GDNF-RET signaling and EGR1 form a positive feedback loop t..:

Marks, Brooke A. ; Pipia, Ilissa M. ; Mukai, Chinatsu...
BMC Cancer.  23 (2023)  1 - p. , 2023
Link: https://doi.org/10.1186/..
 
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3

RNA polymerase II dynamics shape enhancer–promoter interact..:

Barshad, Gilad ; Lewis, James J. ; Chivu, Alexandra G....
Nature Genetics.  55 (2023)  8 - p. 1370-1380 , 2023
Link: https://doi.org/10.1038/..
 
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4

A-MYB and BRDT-dependent RNA Polymerase II pause release or..:

Alexander, Adriana K. ; Rice, Edward J. ; Lujic, Jelena...
Nature Communications.  14 (2023)  1 - p. , 2023
Link: https://doi.org/10.1038/..
 
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5

Cell type and gene expression deconvolution with BayesPrism..:

Chu, Tinyi ; Wang, Zhong ; Pe'er, Dana.
Nature Cancer.  3 (2022)  4 - p. 505-517 , 2022
Link: https://doi.org/10.1038/..
 
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6

Comprehensive microRNA analysis across genome-edited colore..:

Villanueva, Jonathan W. ; Kwong, Lawrence ; Han, Teng...
BMC Genomics.  23 (2022)  1 - p. , 2022
Link: https://doi.org/10.1186/..
 
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7

Genetic dissection of the RNA polymerase II transcription c..:

Chou, Shao-Pei ; Alexander, Adriana K ; Rice, Edward J..
eLife.  11 (2022)  - p. , 2022
Link: https://doi.org/10.7554/..
 
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8

Prediction of histone post-translational modification patte..:

Wang, Zhong ; Chivu, Alexandra G. ; Choate, Lauren A....
Nature Genetics.  54 (2022)  3 - p. 295-305 , 2022
Link: https://doi.org/10.1038/..
 
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9

Darwinian genomics and diversity in the tree of life:

Stephan, Taylorlyn ; Burgess, Shawn M. ; Cheng, Hans...
Proceedings of the National Academy of Sciences.  119 (2022)  4 - p. , 2022
Link: https://doi.org/10.1073/..
 
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10

RNA Pol II pausing facilitates phased pluripotency transiti..:

Abuhashem, Abderhman ; Chivu, Alexandra G. ; Zhao, Yixin...
Genes & Development.  36 (2022)  13-14 - p. 770-789 , 2022
Link: https://doi.org/10.1101/..
 
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11

Chromosome Fusion Affects Genetic Diversity and Evolutionar..:

Cicconardi, Francesco ; Lewis, James J ; Martin, Simon H...
Molecular Biology and Evolution.  38 (2021)  10 - p. 4449-4462 , 2021
Link: https://doi.org/10.1093/..
 
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12

The Dryas iulia Genome Supports Multiple Gains of a W Chrom..:

Lewis, James J ; Cicconardi, Francesco ; Martin, Simon H...
Genome Biology and Evolution.  13 (2021)  7 - p. , 2021
Link: https://doi.org/10.1093/..
 
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13

Uncovering transcriptional dark matter via gene annotation ..:

Wang, Michael F. Z. ; Mantri, Madhav ; Chou, Shao-Pei...
Nature Communications.  12 (2021)  1 - p. , 2021
Link: https://doi.org/10.1038/..
 
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14

Characterizing RNA stability genome-wide through combined a..:

Blumberg, Amit ; Zhao, Yixin ; Huang, Yi-Fei...
BMC Biology.  19 (2021)  1 - p. , 2021
Link: https://doi.org/10.1186/..
 
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15

Identification and prediction of developmental enhancers in..:

Arenas-Mena, César ; Miljovska, Sofija ; Rice, Edward J....
BMC Genomics.  22 (2021)  1 - p. , 2021
Link: https://doi.org/10.1186/..
 
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