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1

Setting Up the JBrowse 2 Genome Browser:

Diesh, Colin ; Buels, Robert ; Stevens, Garrett...
Current Protocols. 4 (2024) 8 - p. , 2024

Link: https://doi.org/10.1002/..

2

The fifth international hackathon for developing computatio..:

Deb, Sontosh K ; Kalra, Divya ; Kubica, Jędrzej...
F1000Research. 13 (2024) - p. 708 , 2024

Link: https://doi.org/10.12688..

3

JBrowse Jupyter: a Python interface to JBrowse 2:

De Jesus Martinez, Teresa ; Hershberg, Elliot A ; Guo, Emma...
Bioinformatics. 39 (2023) 1 - p. , 2023

Link: https://doi.org/10.1093/..

4

JBrowse 2: a modular genome browser with views of synteny a..:

Diesh, Colin ; Stevens, Garrett J ; Xie, Peter...
Genome Biology. 24 (2023) 1 - p. , 2023

Link: https://doi.org/10.1186/..

5

CNVpytor: a tool for copy number variation detection and an..:

Suvakov, Milovan ; Panda, Arijit ; Diesh, Colin..
GigaScience. 10 (2021) 11 - p. , 2021

Link: https://doi.org/10.1093/..

6

JBrowseR: an R interface to the JBrowse 2 genome browser:

Hershberg, Elliot A ; Stevens, Garrett ; Diesh, Colin...
Bioinformatics. 37 (2021) 21 - p. 3914-3915 , 2021

Link: https://doi.org/10.1093/..

7

Methods developed during the first National Center for Biot..:

Mahmoud, Medhat ; Gener, Alejandro Rafael ; Khayat, Michael M....
F1000Research. 9 (2020) - p. 1141 , 2020

Link: https://doi.org/10.12688..

8

Apollo: Democratizing genome annotation:

Dunn, Nathan A. ; Unni, Deepak R. ; Diesh, Colin...
PLOS Computational Biology. 15 (2019) 2 - p. e1006790 , 2019

Link: https://doi.org/10.1371/..

9

WikiGenomes: an open web application for community consumpt..:

Putman, Tim E. ; Lelong, Sebastien ; Burgstaller-Muehlbacher, Sebastian...
Database. 2017 (2017) - p. , 2017

Link: https://doi.org/10.1093/..

10

Bovine Genome Database: new annotation tools for a new refe..:

Shamimuzzaman, Md ; Le Tourneau, Justin J ; Unni, Deepak R...
Nucleic Acids Research. , 2019

Link: https://doi.org/10.1093/..

11

JBrowse: a dynamic web platform for genome visualization an..:

Buels, Robert ; Yao, Eric ; Diesh, Colin M....
Genome Biology. 17 (2016) 1 - p. , 2016

Link: https://doi.org/10.1186/..

12

Bovine Genome Database: new tools for gleaning function fro..:

Elsik, Christine G. ; Unni, Deepak R. ; Diesh, Colin M....
Nucleic Acids Research. 44 (2015) D1 - p. D834-D839 , 2015

Link: https://doi.org/10.1093/..

13

Hymenoptera Genome Database: integrating genome annotations..:

Elsik, Christine G. ; Tayal, Aditi ; Diesh, Colin M....
Nucleic Acids Research. 44 (2015) D1 - p. D793-D800 , 2015

Link: https://doi.org/10.1093/..

14

JBrowse 2: a modular genome browser with views of synteny a..:

Colin Diesh ; Garrett J Stevens ; Peter Xie...
https://doi.org/10.1186/s13059-023-02914-z. , 2023

Link: https://doi.org/10.1186/..

15

GMOD/Apollo: 2.7.0:

Nathan Dunn ; Colin Diesh ; Deepak...
https://github.com/GMOD/Apollo/tree/2.7.0. , 2023

Link: https://zenodo.org/recor..

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