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Evaluating Deep Learning models for predicting ALK-5 inhibi..:
Espinoza, Gabriel Z. ; Angelo, Rafaela M. ; Oliveira, Patricia R...
PLOS ONE. 16 (2021) 1 - p. e0246126 , 2021
PLOS ONE. 16 (2021) 1 - p. e0246126 , 2021
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Evaluating Deep Learning models for predicting ALK-5 inhibi..:
Gabriel Z Espinoza ; Rafaela M Angelo ; Patricia R Oliveira.
https://doi.org/10.1371/journal.pone.0246126. , 2021
https://doi.org/10.1371/journal.pone.0246126. , 2021
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Biplot of the PCA analysis with all ten variables for all t..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/figure/Biplot_of_the_PCA_analysis_with_all_ten_variables_for_all_training_molecules_loadings_are_out_of_scale_/13659186. , 2021
https://figshare.com/articles/figure/Biplot_of_the_PCA_analysis_with_all_ten_variables_for_all_training_molecules_loadings_are_out_of_scale_/13659186. , 2021
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Summary of the grid search process used to select the hyper..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/figure/Summary_of_the_grid_search_process_used_to_select_the_hyperparameters_for_the_SVR_model_/13659171. , 2021
https://figshare.com/articles/figure/Summary_of_the_grid_search_process_used_to_select_the_hyperparameters_for_the_SVR_model_/13659171. , 2021
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Scatter plots and regression lines obtained by the cross-va..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/figure/Scatter_plots_and_regression_lines_obtained_by_the_cross-validation_procedure_using_DNN_RF_and_SVR_actual_versus_predicted_pIC_sub_50_sub_/13659177. , 2021
https://figshare.com/articles/figure/Scatter_plots_and_regression_lines_obtained_by_the_cross-validation_procedure_using_DNN_RF_and_SVR_actual_versus_predicted_pIC_sub_50_sub_/13659177. , 2021
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MSE values obtained for the models trained on different num..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/figure/MSE_values_obtained_for_the_models_trained_on_different_numbers_of_features_following_Sequential_Backward_Floating_Selection_with_a_95_confidence_interval_/13659174. , 2021
https://figshare.com/articles/figure/MSE_values_obtained_for_the_models_trained_on_different_numbers_of_features_following_Sequential_Backward_Floating_Selection_with_a_95_confidence_interval_/13659174. , 2021
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Studentized residuals vs. leverage values for the DNN regre..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/figure/Studentized_residuals_vs_leverage_values_for_the_DNN_regression_/13659180. , 2021
https://figshare.com/articles/figure/Studentized_residuals_vs_leverage_values_for_the_DNN_regression_/13659180. , 2021
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Workflow for the methods used in this work to curate data a..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/figure/Workflow_for_the_methods_used_in_this_work_to_curate_data_and_train_regression_models_/13659159. , 2021
https://figshare.com/articles/figure/Workflow_for_the_methods_used_in_this_work_to_curate_data_and_train_regression_models_/13659159. , 2021
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Summary of the grid search process for choosing the hyperpa..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/figure/Summary_of_the_grid_search_process_for_choosing_the_hyperparameters_for_the_Deep_Neural_Network_/13659165. , 2021
https://figshare.com/articles/figure/Summary_of_the_grid_search_process_for_choosing_the_hyperparameters_for_the_Deep_Neural_Network_/13659165. , 2021
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Actual and predicted pIC 50 for the external validation fro..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/figure/Actual_and_predicted_pIC_sub_50_sub_for_the_external_validation_from_DNN_RF_and_SVR_models_/13659189. , 2021
https://figshare.com/articles/figure/Actual_and_predicted_pIC_sub_50_sub_for_the_external_validation_from_DNN_RF_and_SVR_models_/13659189. , 2021
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Histogram of Tanimoto similarity scores between all possibl..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/figure/Histogram_of_Tanimoto_similarity_scores_between_all_possible_unique_pairs_for_the_558_molecules_in_the_dataset_/13659162. , 2021
https://figshare.com/articles/figure/Histogram_of_Tanimoto_similarity_scores_between_all_possible_unique_pairs_for_the_558_molecules_in_the_dataset_/13659162. , 2021
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Performance measures for the ML models calculated on test a..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/dataset/Performance_measures_for_the_ML_models_calculated_on_test_and_validation_sets_/13659192. , 2021
https://figshare.com/articles/dataset/Performance_measures_for_the_ML_models_calculated_on_test_and_validation_sets_/13659192. , 2021
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Permutation importance of descriptors in the DNN model, wit..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/figure/Permutation_importance_of_descriptors_in_the_DNN_model_with_95_confidence_interval_/13659183. , 2021
https://figshare.com/articles/figure/Permutation_importance_of_descriptors_in_the_DNN_model_with_95_confidence_interval_/13659183. , 2021
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Summary of the grid search process for choosing the hyperpa..:
Gabriel Z. Espinoza (10047870) ; Rafaela M. Angelo (10047873) ; Patricia R. Oliveira (10047876).
https://figshare.com/articles/figure/Summary_of_the_grid_search_process_for_choosing_the_hyperparameters_for_the_RF_model_/13659168. , 2021
https://figshare.com/articles/figure/Summary_of_the_grid_search_process_for_choosing_the_hyperparameters_for_the_RF_model_/13659168. , 2021
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Compensating control participants when the intervention is ..:
Quinn, AK ; Williams, K ; Thompson, LM...
https://openaccess.sgul.ac.uk/id/eprint/111354/1/e001567.full.pdf. , 2019
https://openaccess.sgul.ac.uk/id/eprint/111354/1/e001567.full.pdf. , 2019