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Sequence metrics for BoosterShot sequencing:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/dataset/Sequence_metrics_for_BoosterShot_sequencing_/18862058. , 2022
https://figshare.com/articles/dataset/Sequence_metrics_for_BoosterShot_sequencing_/18862058. , 2022
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Rarefied (10,000 reads/sample) OTU table obtained for the p..:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/dataset/Rarefied_10_000_reads_sample_OTU_table_obtained_for_the_preliminary_experiment_used_to_assess_the_performance_of_BIOME-Preserve_after_being_stored_at_-80_C_/18862103. , 2022
https://figshare.com/articles/dataset/Rarefied_10_000_reads_sample_OTU_table_obtained_for_the_preliminary_experiment_used_to_assess_the_performance_of_BIOME-Preserve_after_being_stored_at_-80_C_/18862103. , 2022
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List of all species recovered, from high and low density me..:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/dataset/List_of_all_species_recovered_from_high_and_low_density_media_plates_of_stool_held_in_BIOME-Preserve_for_72_hours_at_0_01_relative_abundance_according_to_BoosterShot_whole-genome_shotgun_metagenomics_sequencing_data_/18862070. , 2022
https://figshare.com/articles/dataset/List_of_all_species_recovered_from_high_and_low_density_media_plates_of_stool_held_in_BIOME-Preserve_for_72_hours_at_0_01_relative_abundance_according_to_BoosterShot_whole-genome_shotgun_metagenomics_sequencing_data_/18862070. , 2022
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Medium-dependent recovery of anaerobes from BIOME-Preserve:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/figure/Medium-dependent_recovery_of_anaerobes_from_BIOME-Preserve_/18862121. , 2022
https://figshare.com/articles/figure/Medium-dependent_recovery_of_anaerobes_from_BIOME-Preserve_/18862121. , 2022
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Effect of BIOME-Preserve on anaerobe viability:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/figure/Effect_of_BIOME-Preserve_on_anaerobe_viability_/18862115. , 2022
https://figshare.com/articles/figure/Effect_of_BIOME-Preserve_on_anaerobe_viability_/18862115. , 2022
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The maximum relative abundance of each species cultured fro..:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/dataset/The_maximum_relative_abundance_of_each_species_cultured_from_fresh_stool_BIOME-Preserve_held_at_RT_for_72_hours_and_BIOME-Preserve_held_at_RT_for_72_hours_and_then_frozen_at_-80_C_for_one_week_prior_to_culture_recovery_/18862091. , 2022
https://figshare.com/articles/dataset/The_maximum_relative_abundance_of_each_species_cultured_from_fresh_stool_BIOME-Preserve_held_at_RT_for_72_hours_and_BIOME-Preserve_held_at_RT_for_72_hours_and_then_frozen_at_-80_C_for_one_week_prior_to_culture_recovery_/18862091. , 2022
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S1 Fig -:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/figure/S1_Fig_-/18862049. , 2022
https://figshare.com/articles/figure/S1_Fig_-/18862049. , 2022
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8
All successfully cultured species are listed, along with th..:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/dataset/All_successfully_cultured_species_are_listed_along_with_the_number_of_replicate_plates_on_which_growth_was_detected_/18862088. , 2022
https://figshare.com/articles/dataset/All_successfully_cultured_species_are_listed_along_with_the_number_of_replicate_plates_on_which_growth_was_detected_/18862088. , 2022
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Species, and their relative abundances, detected in fresh s..:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/dataset/Species_and_their_relative_abundances_detected_in_fresh_stool_from_donor_3_/18862082. , 2022
https://figshare.com/articles/dataset/Species_and_their_relative_abundances_detected_in_fresh_stool_from_donor_3_/18862082. , 2022
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10
Species, and their relative abundances, detected in fresh s..:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/dataset/Species_and_their_relative_abundances_detected_in_fresh_stool_from_donor_1_/18862076. , 2022
https://figshare.com/articles/dataset/Species_and_their_relative_abundances_detected_in_fresh_stool_from_donor_1_/18862076. , 2022
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The maximum relative abundance of each species cultured fro..:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/dataset/The_maximum_relative_abundance_of_each_species_cultured_from_fresh_stool_BIOME-Preserve_held_at_RT_for_96_hours_and_BIOME-Preserve_held_at_RT_for_96_hours_and_then_frozen_at_-80_C_for_one_week_prior_to_culture_recovery_/18862094. , 2022
https://figshare.com/articles/dataset/The_maximum_relative_abundance_of_each_species_cultured_from_fresh_stool_BIOME-Preserve_held_at_RT_for_96_hours_and_BIOME-Preserve_held_at_RT_for_96_hours_and_then_frozen_at_-80_C_for_one_week_prior_to_culture_recovery_/18862094. , 2022
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Photographs of representative plates from a pilot study sho..:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/figure/Photographs_of_representative_plates_from_a_pilot_study_showing_a_roughly_2-fold_reduction_in_CFU_in_BIOME-Preserve_compared_to_fresh_stool_/18862052. , 2022
https://figshare.com/articles/figure/Photographs_of_representative_plates_from_a_pilot_study_showing_a_roughly_2-fold_reduction_in_CFU_in_BIOME-Preserve_compared_to_fresh_stool_/18862052. , 2022
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Experimental process:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/figure/Experimental_process_/18862109. , 2022
https://figshare.com/articles/figure/Experimental_process_/18862109. , 2022
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Donor-specific bacterial communities:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/figure/Donor-specific_bacterial_communities_/18862112. , 2022
https://figshare.com/articles/figure/Donor-specific_bacterial_communities_/18862112. , 2022
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Sequence metrics for the six samples that underwent DeepSeq..:
Embriette R. Hyde (11986064) ; Hiram Lozano (11986067) ; Steven Cox (215246)
https://figshare.com/articles/dataset/Sequence_metrics_for_the_six_samples_that_underwent_DeepSeq_sequencing_/18862061. , 2022
https://figshare.com/articles/dataset/Sequence_metrics_for_the_six_samples_that_underwent_DeepSeq_sequencing_/18862061. , 2022