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1

AlphaFind: discover structure similarity across the proteom..:

Procházka, David ; Slanináková, Terézia ; Olha, Jaroslav...
Nucleic Acids Research. 52 (2024) W1 - p. W182-W186 , 2024

Link: https://doi.org/10.1093/..

2

Genomic benchmarks: a collection of datasets for genomic se..:

Grešová, Katarína ; Martinek, Vlastimil ; Čechák, David..
BMC Genomic Data. 24 (2023) 1 - p. , 2023

Link: https://doi.org/10.1186/..

3

Transfer Learning Allows Accurate RBP Target Site Predictio..:

Vaculík, Ondřej ; Chalupová, Eliška ; Grešová, Katarína..
Biology. 12 (2023) 10 - p. 1276 , 2023

Link: https://doi.org/10.3390/..

4

RBP-Tar – a searchable database for experimental RBP bindin..:

Gresova, Katarina ; Racek, Tomas ; Martinek, Vlastimil...
F1000Research. 12 (2023) - p. 755 , 2023

Link: https://doi.org/10.12688..

5

Analysis of chimeric reads characterises the diverse target..:

Hejret, Vaclav ; Varadarajan, Nandan Mysore ; Klimentova, Eva...
Scientific Reports. 13 (2023) 1 - p. , 2023

Link: https://doi.org/10.1038/..

6

Using Attribution Sequence Alignment to Interpret Deep Lear..:

Grešová, Katarína ; Vaculík, Ondřej ; Alexiou, Panagiotis
Biology. 12 (2023) 3 - p. 369 , 2023

Link: https://doi.org/10.3390/..

7

miRBind: A Deep Learning Method for miRNA Binding Classific..:

Klimentová, Eva ; Hejret, Václav ; Krčmář, Ján...
Genes. 13 (2022) 12 - p. 2323 , 2022

Link: https://doi.org/10.3390/..

8

Small RNA Targets: Advances in Prediction Tools and High-Th..:

Grešová, Katarína ; Alexiou, Panagiotis ; Giassa, Ilektra-Chara
Biology. 11 (2022) 12 - p. 1798 , 2022

Link: https://doi.org/10.3390/..

9

Analysis of chimeric reads characterises the diverse target..:

Vaclav Hejret ; Nandan Mysore Varadarajan ; Eva Klimentova...
https://doi.org/10.1038/s41598-023-49757-z. , 2023

Link: https://doi.org/10.1038/..

10

Using Attribution Sequence Alignment to Interpret Deep Lear..:

Katarína Grešová ; Ondřej Vaculík ; Panagiotis Alexiou
Bioinformatics. , 2023

Link: https://doi.org/10.3390/..

11

Genomic benchmarks: a collection of datasets for genomic se..:

Katarína Grešová ; Vlastimil Martinek ; David Čechák..
https://doi.org/10.1186/s12863-023-01123-8. , 2023

Link: https://doi.org/10.1186/..

12

ML-Bioinfo-CEITEC/rbp_encode_eclip: Publication:

Katarína Grešová ; Tomáš Raček
https://github.com/ML-Bioinfo-CEITEC/rbp_encode_eclip/tree/v1.0.0. , 2023

Link: https://zenodo.org/recor..

13

Transfer Learning Allows Accurate RBP Target Site Predictio..:

Ondřej Vaculík ; Eliška Chalupová ; Katarína Grešová..
https://www.mdpi.com/2079-7737/12/10/1276. , 2023

Link: https://doi.org/10.3390/..

14

Using Attribution Sequence Alignment to Interpret Deep Lear..:

Katarína Grešová ; Ondřej Vaculík ; Panagiotis Alexiou
https://www.mdpi.com/2079-7737/12/3/369. , 2023

Link: https://doi.org/10.3390/..

15

ML-Bioinfo-CEITEC/rbp_encode_eclip: Publication without dat:

Katarína Grešová ; Tomáš Raček
https://github.com/ML-Bioinfo-CEITEC/rbp_encode_eclip/tree/v1.0.1. , 2023

Link: https://zenodo.org/recor..

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