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1

ProtTrans and multi-window scanning convolutional neural ne..:

Le, Van-The ; Zhan, Zi-Jun ; Vu, Thi-Thu-Phuong..
Journal of Molecular Graphics and Modelling. 130 (2024) - p. 108777 , 2024

Link: https://doi.org/10.1016/..

2

DeepPLM_mCNN: An approach for enhancing ion channel and ion..:

Le, Van-The ; Malik, Muhammad-Shahid ; Tseng, Yi-Hsuan...
Computational Biology and Chemistry. 110 (2024) - p. 108055 , 2024

Link: https://doi.org/10.1016/..

3

Anti-Drugs Chatbot: Chinese BERT-Based Cognitive Intent Ana..:

Lee, Jui-Hsuan ; Wu, Eric Hsiao-Kuang ; Ou, Yu-Yen...
IEEE Transactions on Computational Social Systems. 11 (2024) 1 - p. 514-521 , 2024

Link: https://doi.org/10.1109/..

4

Disto-TRP: An approach for identifying transient receptor p..:

Muazzam Ali Shah, Syed ; Ou, Yu-Yen
Gene. 871 (2023) - p. 147435 , 2023

Link: https://doi.org/10.1016/..

5

Integrating Pre-Trained protein language model and multiple..:

Shahid Malik, Muhammad ; Ou, Yu-Yen
Methods. 220 (2023) - p. 11-20 , 2023

Link: https://doi.org/10.1016/..

6

An Extensive Examination of Discovering 5-Methylcytosine Si..:

Nguyen, Trinh-Trung-Duong ; Tran, The-Anh ; Le, Nguyen-Quoc-Khanh..
IEEE/ACM Transactions on Computational Biology and Bioinformatics. 19 (2022) 1 - p. 87-94 , 2022

Link: https://doi.org/10.1109/..

7

Addressing data imbalance problems in ligand-binding site p..:

Nguyen, Trinh-Trung-Duong ; Nguyen, Duc-Khanh ; Ou, Yu-Yen
Briefings in Bioinformatics. 22 (2021) 6 - p. , 2021

Link: https://doi.org/10.1093/..

8

A transformer architecture based on BERT and 2D convolution..:

Le, Nguyen Quoc Khanh ; Ho, Quang-Thai ; Nguyen, Trinh-Trung-Duong.
Briefings in Bioinformatics. 22 (2021) 5 - p. , 2021

Link: https://doi.org/10.1093/..

9

ActTRANS: Functional classification in active transport pro..:

Taju, Semmy Wellem ; Shah, Syed Muazzam Ali ; Ou, Yu-Yen
Computational Biology and Chemistry. 93 (2021) - p. 107537 , 2021

Link: https://doi.org/10.1016/..

10

Use Chou's 5-steps rule with different word embedding types..:

Nguyen, Duong ; Ho-Quang, Thai ; Nguyen Quoc Khanh, Le..
IEEE/ACM Transactions on Computational Biology and Bioinformatics. , 2021

Link: https://doi.org/10.1109/..

11

GT-Finder: Classify the family of glucose transporters with..:

Ali Shah, Syed Muazzam ; Taju, Semmy Wellem ; Ho, Quang-Thai..
Computers in Biology and Medicine. 131 (2021) - p. 104259 , 2021

Link: https://doi.org/10.1016/..

12

mCNN-ETC: identifying electron transporters and their funct..:

Ho, Quang-Thai ; Le, Nguyen Quoc Khanh ; Ou, Yu-Yen
Briefings in Bioinformatics. 23 (2021) 1 - p. , 2021

Link: https://doi.org/10.1093/..

13

Using k-mer embeddings learned from a Skip-gram based neura..:

Nguyen, Trinh Trung Duong ; Trinh, Van Ngu ; Le, Nguyen Quoc Khanh.
Plant Molecular Biology. 107 (2021) 6 - p. 533-542 , 2021

Link: https://doi.org/10.1007/..

14

FAD-BERT: Improved prediction of FAD binding sites using pr..:

Ho, Quang-Thai ; Nguyen, Trinh-Trung-Duong ; Khanh Le, Nguyen Quoc.
Computers in Biology and Medicine. 131 (2021) - p. 104258 , 2021

Link: https://doi.org/10.1016/..

15

TRP-BERT: Discrimination of transient receptor potential (T..:

Ali Shah, Syed Muazzam ; Ou, Yu-Yen
Computers in Biology and Medicine. 137 (2021) - p. 104821 , 2021

Link: https://doi.org/10.1016/..

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