E-LIB Suche - Ergebnisse für: Peter L. Freddolino (161904)

1

DataSheet_1_Uncovering Transcriptional Regulators and Targe..:

Mia K. Mihailovic (11120184) ; Alyssa M. Ekdahl (11120187) ; Angela Chen (34959)...
https://figshare.com/articles/dataset/DataSheet_1_Uncovering_Transcriptional_Regulators_and_Targets_of_sRNAs_Using_an_Integrative_Data-Mining_Approach_H-NS-Regulated_RseX_as_a_Case_Study_xlsx/14968437. , 2021

Link: https://doi.org/10.3389/..

2

DataSheet_3_Uncovering Transcriptional Regulators and Targe..:

Mia K. Mihailovic (11120184) ; Alyssa M. Ekdahl (11120187) ; Angela Chen (34959)...
https://figshare.com/articles/dataset/DataSheet_3_Uncovering_Transcriptional_Regulators_and_Targets_of_sRNAs_Using_an_Integrative_Data-Mining_Approach_H-NS-Regulated_RseX_as_a_Case_Study_xlsx/14968449. , 2021

Link: https://doi.org/10.3389/..

3

Table showing the GO terms that are enriched in the potenti..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/dataset/Table_showing_the_GO_terms_that_are_enriched_in_the_potential_regulon_of_each_newly_inferred_regulatory_motif_/14849615. , 2021

Link: https://doi.org/10.1371/..

4

Identification of RNA polymerase vs. non-RNA polymerase pro..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/figure/Identification_of_RNA_polymerase_vs_non-RNA_polymerase_protein_occupancy_/14849561. , 2021

Link: https://doi.org/10.1371/..

5

Additional information on the recovery of known TFBS profil..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/journal_contribution/Additional_information_on_the_recovery_of_known_TFBS_profiles_from_IPOD-HR_data_and_inferred_motifs_/14849549. , 2021

Link: https://doi.org/10.1371/..

6

Effects of rifampin treatment on protein occupancy of a hig..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/figure/Effects_of_rifampin_treatment_on_protein_occupancy_of_a_highly_transcribed_region_/14849567. , 2021

Link: https://doi.org/10.1371/..

7

Average occupancies for TFs with known/characterized bindin..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/figure/Average_occupancies_for_TFs_with_known_characterized_binding_sites_/14849555. , 2021

Link: https://doi.org/10.1371/..

8

EPODs are statistically enriched for genes in specific func..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/figure/EPODs_are_statistically_enriched_for_genes_in_specific_functional_categories_/14849648. , 2021

Link: https://doi.org/10.1371/..

9

List of IPOD-HR experiments performed over the course of th..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/dataset/List_of_IPOD-HR_experiments_performed_over_the_course_of_the_study_including_concise_names_used_to_refer_to_each_experiment_in_the_remainder_of_the_text_included_as_a_separate_file_/14849591. , 2021

Link: https://doi.org/10.1371/..

10

Experimental identification of the protein bound to a novel..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/figure/Experimental_identification_of_the_protein_bound_to_a_novel_occupancy_peak_upstream_of_the_i_sdaC_i_promoter_/14849639. , 2021

Link: https://doi.org/10.1371/..

11

Comparisons of the distributions of robust z-scores (withou..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/journal_contribution/Comparisons_of_the_distributions_of_robust_z-scores_without_log_scaling_observed_on_different_genomic_regions_in_the_WT_rich_condition_see_also_cumulative_distributions_of_the_log_sub_10_sub_p_statistic_in_Fig_2E_/14849576. , 2021

Link: https://doi.org/10.1371/..

12

GFF file giving the FIMO hits on the E . coli MG1655 genome..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/dataset/GFF_file_giving_the_FIMO_hits_on_the_i_E_i_i_coli_i_MG1655_genome_for_all_newly_inferred_motifs_described_here_/14849609. , 2021

Link: https://doi.org/10.1371/..

13

Mass spectrometry identified peptide counts showing abundan..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/journal_contribution/Mass_spectrometry_identified_peptide_counts_showing_abundances_of_proteins_pulled_down_by_biotinylated_bait_DNA_from_the_i_sdaC_i_promoter_region_after_pruning_of_likely_contaminants_see_Methods_for_details_/14849585. , 2021

Link: https://doi.org/10.1371/..

14

Effect of peak calling threshold on coverage and enrichment..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/figure/Effect_of_peak_calling_threshold_on_coverage_and_enrichment_of_known_TFBSs_/14849552. , 2021

Link: https://doi.org/10.1371/..

15

Schematic of IPOD-HR technology and detection of context-de..:

Peter L. Freddolino (161904) ; Haley M. Amemiya (4514983) ; Thomas J. Goss (11028119).
https://figshare.com/articles/figure/Schematic_of_IPOD-HR_technology_and_detection_of_context-dependent_binding_by_TF_PurR_/14849624. , 2021

Link: https://doi.org/10.1371/..