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1

Modelling the structures of frameshift-stimulatory pseudokn..:

Sekar, Rohith Vedhthaanth ; Oliva, Patricia J. ; Woodside, Michael T..
PLOS Computational Biology. 19 (2023) 5 - p. e1011124 , 2023

Link: https://doi.org/10.1371/..

2

Probing the origin of prion protein misfolding via reconstr..:

Cortez, Leonardo M. ; Morrison, Anneliese J. ; Garen, Craig R....
Protein Science. 31 (2022) 12 - p. , 2022

Link: https://doi.org/10.1002/..

3

Modeling the structure of the frameshift-stimulatory pseudo..:

Omar, Sara Ibrahim ; Zhao, Meng ; Sekar, Rohith Vedhthaanth...
PLOS Computational Biology. 17 (2021) 1 - p. e1008603 , 2021

Link: https://doi.org/10.1371/..

4

Probing the origin of prion protein misfolding via reconstr..:

Cortez, Leonardo M ; Morrison, Anneliese J ; Garen, Craig R...
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9667828/. , 2022

Link: http://www.ncbi.nlm.nih...

5

Modelling the structures of frameshift-stimulatory pseudokn..:

Rohith Vedhthaanth Sekar ; Patricia J Oliva ; Michael T Woodside
https://doi.org/10.1371/journal.pcbi.1011124. , 2023

Link: https://doi.org/10.1371/..

6

Modeling the structure of the frameshift-stimulatory pseudo..:

Sara Ibrahim Omar ; Meng Zhao ; Rohith Vedhthaanth Sekar...
https://doi.org/10.1371/journal.pcbi.1008603. , 2021

Link: https://doi.org/10.1371/..

7

Modeling the Structure of the Frameshift-Stimulatory Pseudo..:

Ibrahim Omar, Sara ; Zhao, Meng ; Vedhthaanth Sekar, Rohith...
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7879738/. , 2021

Link: http://www.ncbi.nlm.nih...

8

Representative structures from simulations with extended 3′..:

Sara Ibrahim Omar (5727995) ; Meng Zhao (54299) ; Rohith Vedhthaanth Sekar (10005123)...
https://figshare.com/articles/figure/Representative_structures_from_simulations_with_extended_3_ends_/13609947. , 2021

Link: https://doi.org/10.1371/..

9

Selected structures from simulations with significant secon..:

Sara Ibrahim Omar (5727995) ; Meng Zhao (54299) ; Rohith Vedhthaanth Sekar (10005123)...
https://figshare.com/articles/figure/Selected_structures_from_simulations_with_significant_secondary_structure_disruption_/13609917. , 2021

Link: https://doi.org/10.1371/..

10

Representative structures from MD simulations of unthreaded..:

Sara Ibrahim Omar (5727995) ; Meng Zhao (54299) ; Rohith Vedhthaanth Sekar (10005123)...
https://figshare.com/articles/figure/Representative_structures_from_MD_simulations_of_unthreaded_models_/13609938. , 2021

Link: https://doi.org/10.1371/..

11

MD simulations of models with 5′-end threading:

Sara Ibrahim Omar (5727995) ; Meng Zhao (54299) ; Rohith Vedhthaanth Sekar (10005123)...
https://figshare.com/articles/figure/MD_simulations_of_models_with_5_-end_threading_/13609923. , 2021

Link: https://doi.org/10.1371/..

12

Representative dimer structures from MD simulations:

Sara Ibrahim Omar (5727995) ; Meng Zhao (54299) ; Rohith Vedhthaanth Sekar (10005123)...
https://figshare.com/articles/figure/Representative_dimer_structures_from_MD_simulations_/13609950. , 2021

Link: https://doi.org/10.1371/..

13

Pseudoknot models studied:

Sara Ibrahim Omar (5727995) ; Meng Zhao (54299) ; Rohith Vedhthaanth Sekar (10005123)...
https://figshare.com/articles/journal_contribution/Pseudoknot_models_studied_/13609914. , 2021

Link: https://doi.org/10.1371/..

14

SARS-CoV-2 pseudoknot primary and secondary structure:

Sara Ibrahim Omar (5727995) ; Meng Zhao (54299) ; Rohith Vedhthaanth Sekar (10005123)...
https://figshare.com/articles/figure/SARS-CoV-2_pseudoknot_primary_and_secondary_structure_/13609932. , 2021

Link: https://doi.org/10.1371/..

15

Representative structures from MD simulations of models wit..:

Sara Ibrahim Omar (5727995) ; Meng Zhao (54299) ; Rohith Vedhthaanth Sekar (10005123)...
https://figshare.com/articles/figure/Representative_structures_from_MD_simulations_of_models_with_5_-end_threading_/13609941. , 2021

Link: https://doi.org/10.1371/..

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