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Shi, Zhou Jason
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1

Warming effects on grassland soil microbial communities are..:

Lei, Jiesi ; Su, Yuanlong ; Jian, Siyang...
The ISME Journal.  18 (2024)  1 - p. , 2024
Link: https://doi.org/10.1093/..
 
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2

Identifying species-specific k-mers for fast and accurate m..:

Shi, Zhou Jason ; Nayfach, Stephen ; Pollard, Katherine S.
STAR Protocols.  4 (2023)  1 - p. 101964 , 2023
Link: https://doi.org/10.1016/..
 
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3

Maast: genotyping thousands of microbial strains efficientl:

Shi, Zhou Jason ; Nayfach, Stephen ; Pollard, Katherine S.
Genome Biology.  24 (2023)  1 - p. , 2023
Link: https://doi.org/10.1186/..
 
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4

Pitfalls of genotyping microbial communities with rapidly g..:

Zhao, Chunyu ; Shi, Zhou Jason ; Pollard, Katherine S.
Cell Systems.  14 (2023)  2 - p. 160-176.e3 , 2023
Link: https://doi.org/10.1016/..
 
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5

Scalable Microbial Strain Inference in Metagenomic Data Usi..:

Smith, Byron J. ; Li, Xiangpeng ; Shi, Zhou Jason..
Frontiers in Bioinformatics.  2 (2022)  - p. , 2022
Link: https://doi.org/10.3389/..
 
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6

Disentangling direct from indirect relationships in associa..:

Xiao, Naijia ; Zhou, Aifen ; Kempher, Megan L....
Proceedings of the National Academy of Sciences.  119 (2022)  2 - p. , 2022
Link: https://doi.org/10.1073/..
 
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7

Fast and accurate metagenotyping of the human gut microbiom..:

Shi, Zhou Jason ; Dimitrov, Boris ; Zhao, Chunyu..
Nature Biotechnology.  40 (2021)  4 - p. 507-516 , 2021
Link: https://doi.org/10.1038/..
 
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8

A unified catalog of 204,938 reference genomes from the hum..:

Almeida, Alexandre ; Nayfach, Stephen ; Boland, Miguel...
Nature Biotechnology.  39 (2020)  1 - p. 105-114 , 2020
Link: https://doi.org/10.1038/..
 
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9

New insights from uncultivated genomes of the global human ..:

Nayfach, Stephen ; Shi, Zhou Jason ; Seshadri, Rekha..
Nature.  568 (2019)  7753 - p. 505-510 , 2019
Link: https://doi.org/10.1038/..
 
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10

Oral microbiota of periodontal health and disease and their..:

Chen, Casey ; Hemme, Chris ; Beleno, Joan...
The ISME Journal.  12 (2018)  5 - p. 1210-1224 , 2018
Link: https://doi.org/10.1038/..
 
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11

High Concentrations of the Antibiotic Spiramycin in Wastewa..:

Zhang, Yu ; Tian, Zhe ; Liu, Miaomiao...
Environmental Science & Technology.  49 (2015)  15 - p. 9124-9132 , 2015
Link: https://doi.org/10.1021/..
 
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12

Microbial functional trait of rRNA operon copy numbers incr..:

Wu, Linwei ; Yang, Yunfeng ; Chen, Si...
The ISME Journal.  11 (2017)  12 - p. 2874-2878 , 2017
Link: https://doi.org/10.1038/..
 
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13

Maast: genotyping thousands of microbial strains efficientl:

Shi, Zhou Jason ; Nayfach, Stephen ; Pollard, Katherine S
doi:10.5281/zenodo.8200642.  , 2023
Link: https://zenodo.org/recor..
 
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14

Maast: genotyping thousands of microbial strains efficientl:

Shi, Zhou Jason ; Nayfach, Stephen ; Pollard, Katherine S
qt8th8g8sc.  , 2023
Link: https://escholarship.org..
 
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15

Identifying species-specific k-mers for fast and accurate m..:

Shi, Zhou Jason ; Nayfach, Stephen ; Pollard, Katherine S
qt3wf1j4qk.  , 2023
Link: https://escholarship.org..
 
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