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1

SpatialData: an open and universal data framework for spati..:

Marconato, Luca ; Palla, Giovanni ; Yamauchi, Kevin A....
Nature Methods. , 2024

Link: https://doi.org/10.1038/..

2

An open-source framework for end-to-end analysis of electro..:

Heumos, Lukas ; Ehmele, Philipp ; Treis, Tim...
Nature Medicine. , 2024

Link: https://doi.org/10.1038/..

3

MAMS: matrix and analysis metadata standards to facilitate ..:

Sarfraz, Irzam ; Wang, Yichen ; Shastry, Amulya...
Genome Biology. 25 (2024) 1 - p. , 2024

Link: https://doi.org/10.1186/..

4

The scverse project provides a computational ecosystem for ..:

Virshup, Isaac ; Bredikhin, Danila ; Heumos, Lukas...
Nature Biotechnology. , 2023

Link: https://doi.org/10.1038/..

5

Squidpy: a scalable framework for spatial omics analysis:

Palla, Giovanni ; Spitzer, Hannah ; Klein, Michal...
Nature Methods. 19 (2022) 2 - p. 171-178 , 2022

Link: https://doi.org/10.1038/..

6

The Impact of APP on Alzheimer-like Pathogenesis and Gene E..:

Ovchinnikov, Dmitry A. ; Korn, Othmar ; Virshup, Isaac..
Stem Cell Reports. 11 (2018) 1 - p. 32-42 , 2018

Link: https://doi.org/10.1016/..

7

Mural lymphatic endothelial cells regulate meningeal angiog..:

Bower, Neil I ; Koltowska, Katarzyna ; Pichol-Thievend, Cathy...
Nature Neuroscience. 20 (2017) 6 - p. 774-783 , 2017

Link: https://doi.org/10.1038/..

8

Human CD141+ Dendritic Cell and CD1c+ Dendritic Cell Underg..:

Minoda, Yoshihito ; Virshup, Isaac ; Leal Rojas, Ingrid...
Frontiers in Immunology. 8 (2017) - p. , 2017

Link: https://doi.org/10.3389/..

9

SpatialData: an open and universal data framework for spati..:

Marconato, Luca ; Palla, Giovanni ; Yamauchi, Kevin A...
info:eu-repo/semantics/altIdentifier/doi/10.1038/s41592-024-02212-x. , 2024

Link: https://hdl.handle.net/2..

10

OME-Zarr:a cloud-optimized bioimaging file format with inte..:

Moore, Josh ; Basurto-Lozada, Daniela ; Besson, Sébastien...
https://discovery.dundee.ac.uk/en/publications/da709919-7b76-4a38-8c60-26db6783c9a0. , 2023

Link: https://discovery.dundee..

11

Human CD141(+) dendritic cell and CD1c(+) dendritic cell un..:

Minoda, Yoshihito ; Virshup, Isaac ; Rojas, Ingrid Leal...
http://dx.doi.org/10.3389/fimmu.2017.01419. , 2017

Link: https://researchonline.j..

12

scverse/spatialdata: 0.0.7:

LucaMarconato ; Giovanni Palla ; Kevin Yamauchi...
https://github.com/scverse/spatialdata/tree/v0.0.7. , 2023

Link: https://zenodo.org/recor..

13

scverse/spatialdata: test build:

LucaMarconato ; Giovanni Palla ; Kevin Yamauchi...
https://github.com/scverse/spatialdata/tree/v0.0.2. , 2023

Link: https://zenodo.org/recor..

14

ome/ngff: 0.4.0:

Josh Moore ; Sébastien Besson ; Will Moore...
https://github.com/ome/ngff/tree/0.4.0. , 2023

Link: https://zenodo.org/recor..

15

BioJulia/BioSequences.jl: v3.1.4:

Jakob Nybo Nissen ; Sabrina Jaye Ward ; Kenta Sato...
https://github.com/BioJulia/BioSequences.jl/tree/v3.1.4. , 2023

Link: https://zenodo.org/recor..

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