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Berka, Karel
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1

Liposomal Copermeation Assay Reveals Unexpected Membrane In..:

Odehnalová, Klára ; Balouch, Martin ; Storchmannová, Kateřina...
Molecular Pharmaceutics.  21 (2024)  6 - p. 2673-2683 , 2024
Link: https://doi.org/10.1021/..
 
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2

Small change – big consequence: The impact of C15-C16 doubl..:

Vonka, Petr ; Rarova, Lucie ; Bazgier, Vaclav...
The Journal of Steroid Biochemistry and Molecular Biology.  233 (2023)  - p. 106365 , 2023
Link: https://doi.org/10.1016/..
 
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3

ChannelsDB 2.0: a comprehensive database of protein tunnels..:

Špačková, Anna ; Vávra, Ondřej ; Raček, Tomáš...
Nucleic Acids Research.  52 (2023)  D1 - p. D413-D418 , 2023
Link: https://doi.org/10.1093/..
 
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4

ELIXIR and Toxicology: a community in development:

Martens, Marvin ; Stierum, Rob ; Schymanski, Emma L....
F1000Research.  10 (2023)  - p. 1129 , 2023
Link: https://doi.org/10.12688..
 
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5

αCharges: partial atomic charges for AlphaFold structures i..:

Schindler, Ondřej ; Berka, Karel ; Cantara, Alessio...
Nucleic Acids Research.  51 (2023)  W1 - p. W11-W16 , 2023
Link: https://doi.org/10.1093/..
 
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6

Expanding the squaramide library as mycobacterial ATP synth..:

Chasák, Jan ; Oorts, Lauren ; Dak, Milan...
Bioorganic & Medicinal Chemistry.  95 (2023)  - p. 117504 , 2023
Link: https://doi.org/10.1016/..
 
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7

Mol* Volumes and Segmentations: visualization and interpret..:

Chareshneu, Aliaksei ; Midlik, Adam ; Ionescu, Crina-Maria...
Nucleic Acids Research.  51 (2023)  W1 - p. W326-W330 , 2023
Link: https://doi.org/10.1093/..
 
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8

Computational Prodrug Design Methodology for Liposome Formu..:

Balouch, Martin ; Storchmannová, Kateřina ; Štěpánek, František.
Molecular Pharmaceutics.  20 (2023)  4 - p. 2119-2127 , 2023
Link: https://doi.org/10.1021/..
 
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9

Novel heterocyclic hydroxamates as inhibitors of the mycoba..:

Dak, Milan ; Šlachtová, Veronika ; Šebela, Marek...
European Journal of Medicinal Chemistry.  244 (2022)  - p. 114831 , 2022
Link: https://doi.org/10.1016/..
 
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10

Uncovering of cytochrome P450 anatomy by SecStrAnnotator:

Midlik, Adam ; Navrátilová, Veronika ; Moturu, Taraka Ramji...
Scientific Reports.  11 (2021)  1 - p. , 2021
Link: https://doi.org/10.1038/..
 
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11

2DProts: database of family-wide protein secondary structur..:

Hutařová Vařeková, Ivana ; Hutař, Jan ; Midlik, Adam...
Bioinformatics.  37 (2021)  23 - p. 4599-4601 , 2021
Link: https://doi.org/10.1093/..
 
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12

ELIXIR and Toxicology: a community in development:

Martens, Marvin ; Stierum, Rob ; Schymanski, Emma L....
F1000Research.  10 (2021)  - p. 1129 , 2021
Link: https://doi.org/10.12688..
 
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13

Correction to: Optimized SQE atomic charges for peptides ac..:

Schindler, Ondřej ; Raček, Tomáš ; Maršavelski, Aleksandra...
Journal of Cheminformatics.  13 (2021)  1 - p. , 2021
Link: https://doi.org/10.1186/..
 
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14

In silico screening of drug candidates for thermoresponsive..:

Balouch, Martin ; Šrejber, Martin ; Šoltys, Marek...
Molecular Systems Design & Engineering.  6 (2021)  5 - p. 368-380 , 2021
Link: https://doi.org/10.1039/..
 
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15

Optimized SQE atomic charges for peptides accessible via a ..:

Schindler, Ondřej ; Raček, Tomáš ; Maršavelski, Aleksandra...
Journal of Cheminformatics.  13 (2021)  1 - p. , 2021
Link: https://doi.org/10.1186/..
 
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