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Dogan, TUNCA
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1

An integrative framework for clinical diagnosis and knowled..:

Shojaei, Mona ; Mohammadvand, Navid ; Doğan, Tunca...
Computers in Biology and Medicine.  169 (2024)  - p. 107810 , 2024
Link: https://doi.org/10.1016/..
 
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2

Perspectives on tracking data reuse across biodata resource:

Ross, Karen E ; Bastian, Frederic B ; Buys, Matt...
Bioinformatics Advances.  4 (2024)  1 - p. , 2024
Link: https://doi.org/10.1093/..
 
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3

Mutual annotation‐based prediction of protein domain functi..:

Ulusoy, Erva ; Doğan, Tunca
Protein Science.  33 (2024)  6 - p. , 2024
Link: https://doi.org/10.1002/..
 
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4

ProFAB—open protein functional annotation benchmark:

Özdilek, A Samet ; Atakan, Ahmet ; Özsarı, Gökhan...
Briefings in Bioinformatics.  24 (2023)  2 - p. , 2023
Link: https://doi.org/10.1093/..
 
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5

Transfer learning for drug–target interaction prediction:

Dalkıran, Alperen ; Atakan, Ahmet ; Rifaioğlu, Ahmet S...
Bioinformatics.  39 (2023)  Supplement_1 - p. i103-i110 , 2023
Link: https://doi.org/10.1093/..
 
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6

ASCARIS: Positional feature annotation and protein structur..:

Cankara, Fatma ; Doğan, Tunca
Computational and Structural Biotechnology Journal.  21 (2023)  - p. 4743-4758 , 2023
Link: https://doi.org/10.1016/..
 
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7

Democratizing knowledge representation with BioCypher:

Lobentanzer, Sebastian ; Aloy, Patrick ; Baumbach, Jan...
Nature Biotechnology.  41 (2023)  8 - p. 1056-1059 , 2023
Link: https://doi.org/10.1038/..
 
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8

MBDBMetrics: an online metrics tool to measure the impact o..:

Insana, Giuseppe ; Ignatchenko, Alex ; Martin, Maria...
Bioinformatics Advances.  3 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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9

How to approach machine learning-based prediction of drug/c..:

Atas Guvenilir, Heval ; Doğan, Tunca
Journal of Cheminformatics.  15 (2023)  1 - p. , 2023
Link: https://doi.org/10.1186/..
 
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10

Learning functional properties of proteins with language mo..:

Unsal, Serbulent ; Atas, Heval ; Albayrak, Muammer...
Nature Machine Intelligence.  4 (2022)  3 - p. 227-245 , 2022
Link: https://doi.org/10.1038/..
 
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11

UniProt: the Universal Protein Knowledgebase in 2023:

The UniProt Consortium ; Bateman, Alex ; Martin, Maria-Jesus...
Nucleic Acids Research.  51 (2022)  D1 - p. D523-D531 , 2022
Link: https://doi.org/10.1093/..
 
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12

Data Centric Molecular Analysis and Evaluation of Hepatocel..:

Cetin-Atalay, Rengul ; Kahraman, Deniz Cansen ; Nalbat, Esra...
Journal of Gastrointestinal Cancer.  52 (2021)  4 - p. 1266-1276 , 2021
Link: https://doi.org/10.1007/..
 
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13

Protein domain-based prediction of drug/compound–target int..:

Doğan, Tunca ; Akhan Güzelcan, Ece ; Baumann, Marcus...
PLOS Computational Biology.  17 (2021)  11 - p. e1009171 , 2021
Link: https://doi.org/10.1371/..
 
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14

CROssBAR: comprehensive resource of biomedical relations wi..:

Doğan, Tunca ; Atas, Heval ; Joshi, Vishal...
Nucleic Acids Research.  49 (2021)  16 - p. e96-e96 , 2021
Link: https://doi.org/10.1093/..
 
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15

UniProt: the universal protein knowledgebase in 2021:

The UniProt Consortium ; Bateman, Alex ; Martin, Maria-Jesus...
Nucleic Acids Research.  49 (2020)  D1 - p. D480-D489 , 2020
Link: https://doi.org/10.1093/..
 
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