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Lotfollahi, Mohammad
209
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Online (209)
Mediatypes
Articles (Online) (116)
Bookchapter (Online) (2)
OpenAccess-fulltext (90)
Thesis (Online) (1)
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english (176)
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?
1
The future of rapid and automated single-cell data analysis..:
Lotfollahi, Mohammad
;
Yuhan Hao
;
Theis, Fabian J.
.
Cell. 187 (2024) 10 - p. 2343-2358 , 2024
Link:
https://doi.org/10.1016/..
?
2
Multi-modal generative modeling for joint analysis of singl..:
Drost, Felix
;
An, Yang
;
Bonafonte-Pardàs, Irene
...
Nature Communications. 15 (2024) 1 - p. , 2024
Link:
https://doi.org/10.1038/..
?
3
Deep learning in spatially resolved transcriptomics: a comp..:
Zahedi, Roxana
;
Ghamsari, Reza
;
Argha, Ahmadreza
...
Briefings in Bioinformatics. 25 (2024) 2 - p. , 2024
Link:
https://doi.org/10.1093/..
?
4
Deep generative modeling of transcriptional dynamics for RN..:
Gayoso, Adam
;
Weiler, Philipp
;
Lotfollahi, Mohammad
...
Nature Methods. 21 (2023) 1 - p. 50-59 , 2023
Link:
https://doi.org/10.1038/..
?
5
Population-level integration of single-cell datasets enable..:
De Donno, Carlo
;
Hediyeh-Zadeh, Soroor
;
Moinfar, Amir Ali
...
Nature Methods. 20 (2023) 11 - p. 1683-1692 , 2023
Link:
https://doi.org/10.1038/..
?
6
The scverse project provides a computational ecosystem for ..:
Virshup, Isaac
;
Bredikhin, Danila
;
Heumos, Lukas
...
Nature Biotechnology. , 2023
Link:
https://doi.org/10.1038/..
?
7
Best practices for single-cell analysis across modalities:
Heumos, Lukas
;
Schaar, Anna C.
;
Lance, Christopher
...
Nature Reviews Genetics. 24 (2023) 8 - p. 550-572 , 2023
Link:
https://doi.org/10.1038/..
?
8
Single-cell reference mapping to construct and extend cell-..:
Michielsen, Lieke
;
Lotfollahi, Mohammad
;
Strobl, Daniel
...
NAR Genomics and Bioinformatics. 5 (2023) 3 - p. , 2023
Link:
https://doi.org/10.1093/..
?
9
Predicting cellular responses to complex perturbations in h..:
Lotfollahi, Mohammad
;
Klimovskaia Susmelj, Anna
;
De Donno, Carlo
...
Molecular Systems Biology. 19 (2023) 6 - p. , 2023
Link:
https://doi.org/10.15252..
?
10
Single-cell RNA sequencing uncovers heterogeneous transcrip..:
Feriz, Adib Miraki
;
Khosrojerdi, Arezou
;
Lotfollahi, Mohammad
...
Heliyon. 9 (2023) 5 - p. e15694 , 2023
Link:
https://doi.org/10.1016/..
?
11
Biologically informed deep learning to query gene programs ..:
Lotfollahi, Mohammad
;
Rybakov, Sergei
;
Hrovatin, Karin
...
Nature Cell Biology. , 2023
Link:
https://doi.org/10.1038/..
?
12
Modeling single-cell perturbations using deep learning:
Lotfollahi, Mohammad
, 2022
Link:
http://nbn-resolving.de/..
?
13
A Python library for probabilistic analysis of single-cell ..:
Gayoso, Adam
;
Lopez, Romain
;
Xing, Galen
...
Nature Biotechnology. 40 (2022) 2 - p. 163-166 , 2022
Link:
https://doi.org/10.1038/..
?
14
Squidpy: a scalable framework for spatial omics analysis:
Palla, Giovanni
;
Spitzer, Hannah
;
Klein, Michal
...
Nature Methods. 19 (2022) 2 - p. 171-178 , 2022
Link:
https://doi.org/10.1038/..
?
15
Mapping single-cell data to reference atlases by transfer l..:
Lotfollahi, Mohammad
;
Naghipourfar, Mohsen
;
Luecken, Malte D.
...
Nature Biotechnology. 40 (2021) 1 - p. 121-130 , 2021
Link:
https://doi.org/10.1038/..
1-15