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Jordan Eizenga
19
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1
Hydroxymethylation profile of cell-free DNA is a biomarker ..:
Walker, Nicolas J.
;
Rashid, Mamunur
;
Yu, Shirong
...
Scientific Reports. 12 (2022) 1 - p. , 2022
Link:
https://doi.org/10.1038/..
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2
A complete pedigree-based graph workflow for rare candidate..:
Markello, Charles
;
Huang, Charles
;
Rodriguez, Alex
...
Genome Research. , 2022
Link:
https://doi.org/10.1101/..
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3
A strategy for building and using a human reference pangeno..:
Llamas, Bastien
;
Narzisi, Giuseppe
;
Schneider, Valerie
...
F1000Research. 8 (2021) - p. 1751 , 2021
Link:
https://doi.org/10.12688..
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4
Distance indexing and seed clustering in sequence graphs:
Chang, Xian
;
Eizenga, Jordan
;
Novak, Adam M
..
Bioinformatics. 36 (2020) Supplement_1 - p. i146-i153 , 2020
Link:
https://doi.org/10.1093/..
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5
Genotyping structural variants in pangenome graphs using th..:
Hickey, Glenn
;
Heller, David
;
Monlong, Jean
...
Genome Biology. 21 (2020) 1 - p. , 2020
Link:
https://doi.org/10.1186/..
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6
Aerosol Microbiome over the Mediterranean Sea Diversity and..:
Mescioglu, Esra
;
Rahav, Eyal
;
Belkin, Natalia
...
Atmosphere. 10 (2019) 8 - p. 440 , 2019
Link:
https://doi.org/10.3390/..
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7
A strategy for building and using a human reference pangeno..:
Llamas, Bastien
;
Narzisi, Giuseppe
;
Schneider, Valerie
...
F1000Research. 8 (2019) - p. 1751 , 2019
Link:
https://doi.org/10.12688..
?
8
Modelling haplotypes with respect to reference cohort varia..:
Rosen, Yohei
;
Eizenga, Jordan
;
Paten, Benedict
Bioinformatics. 33 (2017) 14 - p. i118-i123 , 2017
Link:
https://doi.org/10.1093/..
?
9
Haplotype-aware pantranscriptome analyses using spliced pan..:
Sibbesen, Jonas A.
;
Eizenga, Jordan M.
;
Novak, Adam M.
...
Nature Methods. 20 (2023) 2 - p. 239-247 , 2023
Link:
https://doi.org/10.1038/..
?
10
Pangenome graph construction from genome alignments with Mi..:
Hickey, Glenn
;
Monlong, Jean
;
Ebler, Jana
...
Nature Biotechnology. , 2023
Link:
https://doi.org/10.1038/..
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11
A draft human pangenome reference:
Liao, Wen-Wei
;
Asri, Mobin
;
Ebler, Jana
...
Nature. 617 (2023) 7960 - p. 312-324 , 2023
Link:
https://doi.org/10.1038/..
?
12
Pan-conserved segment tags identify ultra-conserved sequenc..:
Lee, HoJoon
;
Greer, Stephanie U.
;
Pavlichin, Dmitri S.
...
Cell Reports Methods. 3 (2023) 8 - p. 100543 , 2023
Link:
https://doi.org/10.1016/..
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13
Optimal gap-affine alignment in O(s) space:
Marco-Sola, Santiago
;
Eizenga, Jordan M
;
Guarracino, Andrea
...
Bioinformatics. 39 (2023) 2 - p. , 2023
Link:
https://doi.org/10.1093/..
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14
Pangenomics enables genotyping of known structural variants..:
Sirén, Jouni
;
Monlong, Jean
;
Chang, Xian
...
Science. 374 (2021) 6574 - p. , 2021
Link:
https://doi.org/10.1126/..
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15
Haplotype-aware variant calling with PEPPER-Margin-DeepVari..:
Shafin, Kishwar
;
Pesout, Trevor
;
Chang, Pi-Chuan
...
Nature Methods. 18 (2021) 11 - p. 1322-1332 , 2021
Link:
https://doi.org/10.1038/..
1-15