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Solis‐Lemus, Claudia
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1

MiNAA: Microbiome Network Alignment Algorithm:

Reed Nelson ; Rosa Aghdam ; Claudia Solis-Lemus
doi:10.6084/m9.figshare.25153106.v1.  , 2024
Link: https://doi.org/10.6084/..
 
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2

MiNAA: Microbiome Network Alignment Algorithm:

Reed Nelson ; Rosa Aghdam ; Claudia Solis-Lemus
doi:10.6084/m9.figshare.25153106.v1.  , 2024
Link: https://doi.org/10.6084/..
 
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3

Morphological metrics are generally stable across replicate:

Jennifer B. Rattray ; Ryan J. Lowhorn ; Ryan Walden...
doi:10.1371/journal.pcbi.1011699.g004.  , 2023
Link: https://doi.org/10.1371/..
 
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4

Correlation matrix for all morphological and complexity met..:

Jennifer B. Rattray ; Ryan J. Lowhorn ; Ryan Walden...
doi:10.1371/journal.pcbi.1011699.s001.  , 2023
Link: https://doi.org/10.1371/..
 
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5

Avenues for finer scale image segmentation and augmentation:

Jennifer B. Rattray ; Ryan J. Lowhorn ; Ryan Walden...
doi:10.1371/journal.pcbi.1011699.g007.  , 2023
Link: https://doi.org/10.1371/..
 
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6

SiPhyNetwork: An R package for simulating phylogenetic netw..:

Joshua A. Justison ; Claudia Solis‐Lemus ; Tracy A. Heath
https://doi.org/10.1111/2041-210X.14116.  , 2023
Link: https://doi.org/10.1111/..
 
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7

Random sample of the P . aeruginosa train/validation strain..:

Jennifer B. Rattray ; Ryan J. Lowhorn ; Ryan Walden...
doi:10.1371/journal.pcbi.1011699.g002.  , 2023
Link: https://doi.org/10.1371/..
 
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8

Performance comparison of transfer learning methods:

Jennifer B. Rattray ; Ryan J. Lowhorn ; Ryan Walden...
doi:10.1371/journal.pcbi.1011699.g005.  , 2023
Link: https://doi.org/10.1371/..
 
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9

Parameters for all models:

Jennifer B. Rattray ; Ryan J. Lowhorn ; Ryan Walden...
doi:10.1371/journal.pcbi.1011699.s004.  , 2023
Link: https://doi.org/10.1371/..
 
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10

Diversity of P . aeruginosa strains in both classic morphol..:

Jennifer B. Rattray ; Ryan J. Lowhorn ; Ryan Walden...
doi:10.1371/journal.pcbi.1011699.g003.  , 2023
Link: https://doi.org/10.1371/..
 
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11

Bacterial colony morphology varies across and within specie:

Jennifer B. Rattray ; Ryan J. Lowhorn ; Ryan Walden...
doi:10.1371/journal.pcbi.1011699.g001.  , 2023
Link: https://doi.org/10.1371/..
 
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12

Unsupervised Learning of Phylogenetic Trees via Split-Weigh..:

Kong, Yibo ; Tiley, George P ; Solis-Lemus, Claudia
http://arxiv.org/abs/2312.16074.  , 2023
Link: http://arxiv.org/abs/231..
 
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13

Performance contribution of data pre-processing, augmentati..:

Jennifer B. Rattray ; Ryan J. Lowhorn ; Ryan Walden...
doi:10.1371/journal.pcbi.1011699.t001.  , 2023
Link: https://doi.org/10.1371/..
 
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14

Performance comparison with shallow learning (SVM) models:

Jennifer B. Rattray ; Ryan J. Lowhorn ; Ryan Walden...
doi:10.1371/journal.pcbi.1011699.t002.  , 2023
Link: https://doi.org/10.1371/..
 
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15

Statistical comparisons of transfer learning methods (Fig 5:

Jennifer B. Rattray ; Ryan J. Lowhorn ; Ryan Walden...
doi:10.1371/journal.pcbi.1011699.s002.  , 2023
Link: https://doi.org/10.1371/..
 
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