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Abdennur, Nezar
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1

Pairtools: From sequencing data to chromosome contacts:

Open2C ; Abdennur, Nezar ; Fudenberg, Geoffrey...
PLOS Computational Biology.  20 (2024)  5 - p. e1012164 , 2024
Link: https://doi.org/10.1371/..
 
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2

Cooltools: Enabling high-resolution Hi-C analysis in Python:

Open2C ; Abdennur, Nezar ; Abraham, Sameer...
PLOS Computational Biology.  20 (2024)  5 - p. e1012067 , 2024
Link: https://doi.org/10.1371/..
 
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3

Bioframe: operations on genomic intervals in Pandas datafra..:

Open2C ; Abdennur, Nezar ; Fudenberg, Geoffrey...
Bioinformatics.  40 (2024)  2 - p. , 2024
Link: https://doi.org/10.1093/..
 
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4

Bigtools: a high-performance BigWig and BigBed library in R..:

Huey, Jack D ; Abdennur, Nezar ; Wren, Jonathan
Bioinformatics.  40 (2024)  6 - p. , 2024
Link: https://doi.org/10.1093/..
 
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5

A non-coding variant linked to metabolic obesity with norma..:

Glunk, Viktoria ; Laber, Samantha ; Sinnott-Armstrong, Nasa...
Nature Metabolism.  5 (2023)  5 - p. 861-879 , 2023
Link: https://doi.org/10.1038/..
 
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6

Author Correction: The 4D Nucleome Data Portal as a resourc..:

Reiff, Sarah B. ; Schroeder, Andrew J. ; Kırlı, Koray...
Nature Communications.  13 (2022)  1 - p. , 2022
Link: https://doi.org/10.1038/..
 
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7

Diverse silent chromatin states modulate genome compartment..:

Spracklin, George ; Abdennur, Nezar ; Imakaev, Maxim...
Nature Structural & Molecular Biology.  30 (2022)  1 - p. 38-51 , 2022
Link: https://doi.org/10.1038/..
 
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8

The 4D Nucleome Data Portal as a resource for searching and..:

Reiff, Sarah B. ; Schroeder, Andrew J. ; Kırlı, Koray...
Nature Communications.  13 (2022)  1 - p. , 2022
Link: https://doi.org/10.1038/..
 
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9

Scool: a new data storage format for single-cell Hi-C data:

Wolff, Joachim ; Abdennur, Nezar ; Backofen, Rolf.
Bioinformatics.  37 (2021)  9 - p. 1337-1337 , 2021
Link: https://doi.org/10.1093/..
 
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10

Scool: a new data storage format for single-cell Hi-C data:

Wolff, Joachim ; Abdennur, Nezar ; Backofen, Rolf..
Bioinformatics.  37 (2020)  14 - p. 2053-2054 , 2020
Link: https://doi.org/10.1093/..
 
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11

Two major mechanisms of chromosome organization:

Mirny, Leonid A ; Imakaev, Maxim ; Abdennur, Nezar
Current Opinion in Cell Biology.  58 (2019)  - p. 142-152 , 2019
Link: https://doi.org/10.1016/..
 
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12

The genome-wide multi-layered architecture of chromosome pa..:

Erceg, Jelena ; AlHaj Abed, Jumana ; Goloborodko, Anton...
Nature Communications.  10 (2019)  1 - p. , 2019
Link: https://doi.org/10.1038/..
 
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13

Chromatin organization by an interplay of loop extrusion an..:

Nuebler, Johannes ; Fudenberg, Geoffrey ; Imakaev, Maxim..
Proceedings of the National Academy of Sciences of the United States of America.  115 (2018)  29 - p. E6697-E6706 , 2018
Link: https://www.jstor.org/st..
 
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14

HiGlass: web-based visual exploration and analysis of genom..:

Kerpedjiev, Peter ; Abdennur, Nezar ; Lekschas, Fritz...
Genome Biology.  19 (2018)  1 - p. , 2018
Link: https://doi.org/10.1186/..
 
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15

Chromatin organization by an interplay of loop extrusion an..:

Nuebler, Johannes ; Fudenberg, Geoffrey ; Imakaev, Maxim..
Proceedings of the National Academy of Sciences.  115 (2018)  29 - p. , 2018
Link: https://doi.org/10.1073/..
 
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