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Abdizadeh, Haleh
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1

Martini 3: a general purpose force field for coarse-grained..:

Souza, Paulo C. T. ; Alessandri, Riccardo ; Barnoud, Jonathan...
Nature Methods.  18 (2021)  4 - p. 382-388 , 2021
Link: https://doi.org/10.1038/..
 
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2

General Protocol for Constructing Molecular Models of Nanod..:

Kjølbye, Lisbeth R. ; De Maria, Leonardo ; Wassenaar, Tsjerk A....
Journal of Chemical Information and Modeling.  61 (2021)  6 - p. 2869-2883 , 2021
Link: https://doi.org/10.1021/..
 
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3

Titratable Martini model for constant pH simulations:

Grünewald, Fabian ; Souza, Paulo C. T. ; Abdizadeh, Haleh...
The Journal of Chemical Physics.  153 (2020)  2 - p. , 2020
Link: https://doi.org/10.1063/..
 
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4

A Coarse-Grained Methodology Identifies Intrinsic Mechanism..:

Abdizadeh, Haleh ; Jalalypour, Farzaneh ; Atilgan, Ali Rana.
Frontiers in Molecular Biosciences.  7 (2020)  - p. , 2020
Link: https://doi.org/10.3389/..
 
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5

Membrane mediated toppling mechanism of the folate energy c..:

Faustino, Ignacio ; Abdizadeh, Haleh ; Souza, Paulo C. T....
Nature Communications.  11 (2020)  1 - p. , 2020
Link: https://doi.org/10.1038/..
 
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6

Using Small-Angle Scattering and Contrast Matching to Under..:

Draper, Emily R. ; Dietrich, Bart ; McAulay, Kate...
Matter.  2 (2020)  3 - p. 764-778 , 2020
Link: https://doi.org/10.1016/..
 
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7

Emerging Diversity in Lipid–Protein Interactions:

Corradi, Valentina ; Sejdiu, Besian I. ; Mesa-Galloso, Haydee...
Chemical Reviews.  119 (2019)  9 - p. 5775-5848 , 2019
Link: https://doi.org/10.1021/..
 
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8

High-Order Epistasis in Catalytic Power of Dihydrofolate Re..:

Tamer, Yusuf Talha ; Gaszek, Ilona K ; Abdizadeh, Haleh...
Molecular Biology and Evolution.  36 (2019)  7 - p. 1533-1550 , 2019
Link: https://doi.org/10.1093/..
 
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9

Mechanisms by Which Salt Concentration Moderates the Dynami..:

Abdizadeh, Haleh ; Atilgan, Ali Rana ; Atilgan, Canan
The Journal of Physical Chemistry B.  121 (2017)  18 - p. 4778-4789 , 2017
Link: https://doi.org/10.1021/..
 
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10

Increased substrate affinity in the Escherichia coli L28R d..:

Abdizadeh, Haleh ; Tamer, Yusuf Talha ; Acar, Omer...
Physical Chemistry Chemical Physics.  19 (2017)  18 - p. 11416-11428 , 2017
Link: https://doi.org/10.1039/..
 
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11

Predicting long term cooperativity and specific modulators ..:

Abdizadeh, Haleh ; Atilgan, Canan
Physical Chemistry Chemical Physics.  18 (2016)  11 - p. 7916-7926 , 2016
Link: https://doi.org/10.1039/..
 
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12

Detailed molecular dynamics simulations of human transferri..:

Abdizadeh, Haleh ; Atilgan, Ali Rana ; Atilgan, Canan
JBIC Journal of Biological Inorganic Chemistry.  20 (2015)  4 - p. 705-718 , 2015
Link: https://doi.org/10.1007/..
 
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13

General Protocol for Constructing Molecular Models of Nanod..:

Kjølbye, Lisbeth R ; De Maria, Leonardo ; Wassenaar, Tsjerk A...
https://pure.au.dk/portal/en/publications/1018c2f1-7e57-48c8-9dfb-ad76643e9c50.  , 2021
Link: https://pure.au.dk/porta..
 
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14

Martini 3: a general purpose force field for coarse-grained..:

Souza, Paulo ; Alessandri, Riccardo ; Barnoud, Jonathan...
info:eu-repo/semantics/altIdentifier/doi/10.1038/s41592-021-01098-3.  , 2021
Link: https://cnrs.hal.science..
 
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15

General Protocol for Constructing Molecular Models of Nanod..:

Kjølbye, Lisbeth R ; De Maria, Leonardo ; Wassenaar, Tsjerk A...
https://research.rug.nl/en/publications/c3dcc550-9d19-4ca2-9ba0-b93a33520fe8.  , 2021
Link: https://hdl.handle.net/1..
 
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