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Abigail Leavitt LaBella (10668487)
22  results:
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1

A model for ecological codon adaptation in the GAL actose m..:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/figure/A_model_for_ecological_codon_adaptation_in_the_i_GAL_i_actose_metabolism_pathway_/14449180.  , 2021
Link: https://doi.org/10.1371/..
 
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2

Correlation of KEGG orthologous genes with GAL actose optim..:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/dataset/Correlation_of_KEGG_orthologous_genes_with_i_GAL_i_actose_optimization_/14449162.  , 2021
Link: https://doi.org/10.1371/..
 
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3

Comparisons of optimal codon usage in GAL genes:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/journal_contribution/Comparisons_of_optimal_codon_usage_in_i_GAL_i_genes_/14449132.  , 2021
Link: https://doi.org/10.1371/..
 
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4

Predictions of growth rate on galactose medium from random ..:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/journal_contribution/Predictions_of_growth_rate_on_galactose_medium_from_random_codon_i_GAL_i_genes_do_not_accurately_predict_growth_rate_measured_in_the_laboratory_/14449153.  , 2021
Link: https://doi.org/10.1371/..
 
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5

Codon optimization in the GAL pathway is correlated with sp..:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/figure/Codon_optimization_in_the_i_GAL_i_pathway_is_correlated_with_specific_ecological_niches_in_2_different_major_clades_of_budding_yeasts_/14449174.  , 2021
Link: https://doi.org/10.1371/..
 
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6

Residual and Q-Q normalized plots of phylogenetic generaliz..:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/journal_contribution/Residual_and_Q-Q_normalized_plots_of_phylogenetic_generalized_least_squares_PGLS_analysis_of_codon_optimization_and_normalized_growth_rate_on_galactose_containing_medium_/14449126.  , 2021
Link: https://doi.org/10.1371/..
 
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7

Codon optimization in the mannose metabolism gene PMI40 is ..:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/journal_contribution/Codon_optimization_in_the_mannose_metabolism_gene_i_PMI40_i_is_not_correlated_with_growth_rate_on_mannose-containing_medium_/14449147.  , 2021
Link: https://doi.org/10.1371/..
 
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Using PGLS linear correlations between codon optimization i..:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/journal_contribution/Using_PGLS_linear_correlations_between_codon_optimization_in_the_i_GAL_i_genes_and_growth_rate_on_galactose_we_predicted_the_growth_rate_for_2_previously_unanalyzed_species_i_Kluyveromyces_wickerhamii_i_blue_data_and_i_Wickerhamiella_occide/14449150.  , 2021
Link: https://doi.org/10.1371/..
 
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Growth curve example for the species Debaryomyces nepalensi:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/journal_contribution/Growth_curve_example_for_the_species_i_Debaryomyces_nepalensis_i_/14449123.  , 2021
Link: https://doi.org/10.1371/..
 
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10

PIC analysis of correlation between growth rate on galactos..:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/journal_contribution/PIC_analysis_of_correlation_between_growth_rate_on_galactose_containing_medium_and_codon_optimization_in_the_gene_i_PGM1_PGM2_i_/14449138.  , 2021
Link: https://doi.org/10.1371/..
 
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11

Closely related Kluyveromyces species exhibit differential ..:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/figure/Closely_related_i_Kluyveromyces_i_species_exhibit_differential_codon_optimization_in_the_i_GAL_i_pathway_associated_with_isolation_from_dairy_environments_/14449177.  , 2021
Link: https://doi.org/10.1371/..
 
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12

Codon optimization in the GAL pathway is positively and sig..:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/figure/Codon_optimization_in_the_i_GAL_i_pathway_is_positively_and_significantly_correlated_with_growth_rate_on_galactose_/14449171.  , 2021
Link: https://doi.org/10.1371/..
 
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13

Associated ecologies for the species studies:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/dataset/Associated_ecologies_for_the_species_studies_/14449159.  , 2021
Link: https://doi.org/10.1371/..
 
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14

Species information for the studied Saccharomycotina:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/dataset/Species_information_for_the_studied_Saccharomycotina_/14449156.  , 2021
Link: https://doi.org/10.1371/..
 
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15

The GAL pathway and the distribution of galactose metabolis..:

Abigail Leavitt LaBella (10668487) ; Dana A. Opulente (7289252) ; Jacob L. Steenwyk (5802475)..
https://figshare.com/articles/figure/The_i_GAL_i_pathway_and_the_distribution_of_galactose_metabolism_i_GAL_i_genes_and_preferred_codon_usage_across_the_Saccharomycotina_/14449168.  , 2021
Link: https://doi.org/10.1371/..
 
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