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Aboul‐ela, Fareed
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1

The Perturbed Free‐Energy Landscape: Linking Ligand Binding..:

Abdelsattar, Abdallah S. ; Mansour, Youssef ; Aboul‐ela, Fareed
ChemBioChem.  22 (2021)  9 - p. 1499-1516 , 2021
Link: https://doi.org/10.1002/..
 
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2

Statistical mechanical prediction of ligand perturbation to..:

Alaidi, Osama ; Aboul‐ela, Fareed
Journal of Computational Chemistry.  41 (2020)  16 - p. 1521-1537 , 2020
Link: https://doi.org/10.1002/..
 
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3

Linking aptamer‐ligand binding and expression platform fold..:

Aboul‐ela, Fareed ; Huang, Wei ; Abd Elrahman, Maaly..
WIREs RNA.  6 (2015)  6 - p. 631-650 , 2015
Link: https://doi.org/10.1002/..
 
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4

Identification and characterization of a thiamine pyrophosp..:

Mitra, Sunayana ; Aboul‐ela, Fareed
The FASEB Journal.  24 (2010)  S1 - p. , 2010
Link: https://doi.org/10.1096/..
 
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5

Dynamics differences of SAM‐I riboswitch aptamer between SA..:

Huang, Wei ; Aboul‐ela, Fareed ; Kim, Joohyun..
The FASEB Journal.  23 (2009)  S1 - p. , 2009
Link: https://doi.org/10.1096/..
 
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6

Protocol for efficient fluorescence 3′ end-labeling of nati..:

Awwad, Dahlia A. ; Rahmouni, A. Rachid ; Aboul-ela, Fareed
MethodsX.  7 (2020)  - p. 101148 , 2020
Link: https://doi.org/10.1016/..
 
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7

The Impact of a Ligand Binding on Strand Migration in the S..:

Huang, Wei ; Kim, Joohyun ; Jha, Shantenu..
PLoS Computational Biology.  9 (2013)  5 - p. e1003069 , 2013
Link: https://doi.org/10.1371/..
 
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8

Conformational Heterogeneity of the SAM-I Riboswitch Transc..:

Huang, Wei ; Kim, Joohyun ; Jha, Shantenu.
Journal of Molecular Biology.  418 (2012)  5 - p. 331-349 , 2012
Link: https://doi.org/10.1016/..
 
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9

Corrigendum to "Conformational Heterogeneity of the SAM-I R..:

Huang, Wei ; Kim, Joohyun ; Jha, Shantenu.
Journal of Molecular Biology.  420 (2012)  3 - p. 258 , 2012
Link: https://doi.org/10.1016/..
 
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10

Energy landscape analysis for regulatory RNA finding using ..:

Kim, Joohyun ; Huang, Wei ; Maddineni, Sharath..
Concurrency and Computation: Practice and Experience.  23 (2011)  17 - p. 2292-2304 , 2011
Link: https://doi.org/10.1002/..
 
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11

Exploring the RNA folding energy landscape using scalable d..:

, In: Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing,
Kim, Joohyun ; Huang, Wei ; Maddineni, Sharath.. - p. 477-488 , 2010
Link: https://dl.acm.org/doi/1..
 
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12

A mechanism for S-adenosyl methionine assisted formation of..:

Huang, Wei ; Kim, Joohyun ; Jha, Shantenu.
Nucleic Acids Research.  37 (2009)  19 - p. 6528-6539 , 2009
Link: https://doi.org/10.1093/..
 
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13

Design and Implementation of an Ribonucleic Acid (RNA) Dire..:

Bodoor, Khaled ; Boyapati, Vamsi ; Gopu, Vikram...
Journal of Medicinal Chemistry.  52 (2009)  12 - p. 3753-3761 , 2009
Link: https://doi.org/10.1021/..
 
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14

Towards the discovery of drug-like RNA ligands?:

Foloppe, Nicolas ; Matassova, Natalia ; Aboul-ela, Fareed
Drug Discovery Today.  11 (2006)  21-22 - p. 1019-1027 , 2006
Link: https://doi.org/10.1016/..
 
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15

Rational Design of Inhibitors of HIV-1 TAR RNA through the ..:

Davis, Ben ; Afshar, Mohammad ; Varani, Gabriele...
Journal of Molecular Biology.  336 (2004)  2 - p. 343-356 , 2004
Link: https://doi.org/10.1016/..
 
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