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Aleksandra I Jarmolinska
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1

AlphaKnot 2.0: a web server for the visualization of protei..:

Rubach, Pawel ; Sikora, Maciej ; Jarmolinska, Aleksandra I..
Nucleic Acids Research.  52 (2024)  W1 - p. W187-W193 , 2024
Link: https://doi.org/10.1093/..
 
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2

Slipknotted and unknotted monovalent cation-proton antiport..:

Zayats, Vasilina ; Perlinska, Agata P. ; Jarmolinska, Aleksandra I....
PLOS Computational Biology.  17 (2021)  10 - p. e1009502 , 2021
Link: https://doi.org/10.1371/..
 
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3

PconsFam: An Interactive Database of Structure Predictions ..:

Lamb, John ; Jarmolinska, Aleksandra I. ; Michel, Mirco...
Journal of Molecular Biology.  431 (2019)  13 - p. 2442-2448 , 2019
Link: https://doi.org/10.1016/..
 
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4

DCA-MOL: A PyMOL Plugin To Analyze Direct Evolutionary Coup..:

Jarmolinska, Aleksandra I. ; Zhou, Qin ; Sulkowska, Joanna I..
Journal of Chemical Information and Modeling.  59 (2019)  2 - p. 625-629 , 2019
Link: https://doi.org/10.1021/..
 
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5

Knot_pull—python package for biopolymer smoothing and knot ..:

Jarmolinska, Aleksandra I ; Gambin, Anna ; Sulkowska, Joanna I.
Bioinformatics.  36 (2019)  3 - p. 953-955 , 2019
Link: https://doi.org/10.1093/..
 
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6

Proteins' Knotty Problems:

Jarmolinska, Aleksandra I. ; Perlinska, Agata P. ; Runkel, Robert...
Journal of Molecular Biology.  431 (2019)  2 - p. 244-257 , 2019
Link: https://doi.org/10.1016/..
 
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7

KnotGenome: a server to analyze entanglements of chromosome:

Sulkowska, Joanna I ; Niewieczerzal, Szymon ; Jarmolinska, Aleksandra I...
Nucleic Acids Research.  46 (2018)  W1 - p. W17-W24 , 2018
Link: https://doi.org/10.1093/..
 
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8

LinkProt: a database collecting information about biologica..:

Dabrowski-Tumanski, Pawel ; Jarmolinska, Aleksandra I. ; Niemyska, Wanda...
Nucleic Acids Research.  45 (2016)  D1 - p. D243-D249 , 2016
Link: https://doi.org/10.1093/..
 
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9

Slipknotted and unknotted monovalent cation-proton antiport..:

Vasilina Zayats ; Agata P Perlinska ; Aleksandra I Jarmolinska...
https://doi.org/10.1371/journal.pcbi.1009502.  , 2021
Link: https://doi.org/10.1371/..
 
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10

Methods:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/journal_contribution/Methods_/18394142.  , 2021
Link: https://doi.org/10.1371/..
 
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11

Multiple sequence alignment of the domains profiles:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Multiple_sequence_alignment_of_the_domains_profiles_/18394118.  , 2021
Link: https://doi.org/10.1371/..
 
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12

Bayesian phylogenetic tree 4:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Bayesian_phylogenetic_tree_4_/18394127.  , 2021
Link: https://doi.org/10.1371/..
 
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13

Projection of the phylogenetic tree of all 17 families stud..:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Projection_of_the_phylogenetic_tree_of_all_17_families_studied_here_on_the_Tree_of_Life_/18394133.  , 2021
Link: https://doi.org/10.1371/..
 
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14

Sequence logos of both slipknotted and unknotted protein fa..:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/figure/Sequence_logos_of_both_slipknotted_and_unknotted_protein_families_/18394109.  , 2021
Link: https://doi.org/10.1371/..
 
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15

Phylogenetic tree from MrBayes:

Vasilina Zayats (138896) ; Agata P. Perlinska (8893289) ; Aleksandra I. Jarmolinska (11948108)...
https://figshare.com/articles/dataset/Phylogenetic_tree_from_MrBayes_/18394151.  , 2021
Link: https://doi.org/10.1371/..
 
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