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Alexandru I. Tomescu
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1

cloudrnaSPAdes: isoform assembly using bulk barcoded RNA se..:

Meleshko, Dmitry ; Prjbelski, Andrey D ; Raiko, Mikhail...
Bioinformatics.  40 (2024)  2 - p. , 2024
Link: https://doi.org/10.1093/..
 
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2

Simplicity in Eulerian circuits: Uniqueness and safety:

Obscura Acosta, Nidia ; Tomescu, Alexandru I.
Information Processing Letters.  183 (2024)  - p. 106421 , 2024
Link: https://doi.org/10.1016/..
 
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3

Width Helps and Hinders Splitting Flows:

Cáceres, Manuel ; Cairo, Massimo ; Grigorjew, Andreas...
ACM Transactions on Algorithms.  20 (2024)  2 - p. 1-20 , 2024
Link: https://doi.org/10.1145/..
 
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4

PABLOG: a Primer Analysis tool using a Bee‐Like approach on..:

Ferrigno, Michele ; Frazzetto, Paola ; Prjibelski, Andrey..
Physiologia Plantarum.  176 (2024)  3 - p. , 2024
Link: https://doi.org/10.1111/..
 
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5

Genome-scale algorithm design 

bioinformatics in the era of high-throughput sequencing 
Mäkinen, Veli ; Belazzougui, Djamal ; Tomescu, Alexandru I.. - Second edition. . , 2023
Link: https://doi.org/10.1017/..
 
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6

Extremely fast construction and querying of compacted and c..:

Cracco, Andrea ; Tomescu, Alexandru I.
Genome Research.  , 2023
Link: https://doi.org/10.1101/..
 
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7

A safety framework for flow decomposition problems via inte..:

Dias, Fernando H C ; Cáceres, Manuel ; Williams, Lucia...
Bioinformatics.  39 (2023)  11 - p. , 2023
Link: https://doi.org/10.1093/..
 
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8

Sensitive inference of alignment-safe intervals from biodiv..:

Grigorjew, Andreas ; Gynter, Artur ; Dias, Fernando H. C....
Genome Biology.  24 (2023)  1 - p. , 2023
Link: https://doi.org/10.1186/..
 
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9

Genome Assembly, from Practice to Theory: Safe, Complete an..:

Cairo, Massimo ; Rizzi, Romeo ; Tomescu, Alexandru I..
ACM Transactions on Algorithms.  20 (2023)  1 - p. 1-26 , 2023
Link: https://doi.org/10.1145/..
 
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10

On the Complexity of String Matching for Graphs:

Equi, Massimo ; Mäkinen, Veli ; Tomescu, Alexandru I..
ACM Transactions on Algorithms.  19 (2023)  3 - p. 1-25 , 2023
Link: https://doi.org/10.1145/..
 
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11

Matchtigs: minimum plain text representation of k-mer sets:

Schmidt, Sebastian ; Khan, Shahbaz ; Alanko, Jarno N...
Genome Biology.  24 (2023)  1 - p. , 2023
Link: https://doi.org/10.1186/..
 
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12

Graphs cannot be indexed in polynomial time for sub-quadrat..:

Equi, Massimo ; Mäkinen, Veli ; Tomescu, Alexandru I.
Theoretical Computer Science.  975 (2023)  - p. 114128 , 2023
Link: https://doi.org/10.1016/..
 
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13

Flow Decomposition With Subpath Constraints:

Williams, Lucia ; Tomescu, Alexandru I. ; Mumey, Brendan
IEEE/ACM Transactions on Computational Biology and Bioinformatics.  20 (2023)  1 - p. 360-370 , 2023
Link: https://doi.org/10.1109/..
 
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14

Chaining for accurate alignment of erroneous long reads to ..:

Ma, Jun ; Cáceres, Manuel ; Salmela, Leena...
Bioinformatics.  39 (2023)  8 - p. , 2023
Link: https://doi.org/10.1093/..
 
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15

Safety in Multi-Assembly via Paths Appearing in All Path Co..:

Cáceres, Manuel ; Mumey, Brendan ; Husić, Edin...
IEEE/ACM Transactions on Computational Biology and Bioinformatics.  19 (2022)  6 - p. 3673-3684 , 2022
Link: https://doi.org/10.1109/..
 
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