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Arantes, Pablo R.
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1

Biophysical origin of adenine base editors' improved editin..:

Arantes, Pablo R. ; Sinha, Souvik ; Chen, Xiaoyu...
Biophysical Journal.  123 (2024)  3 - p. 340a , 2024
Link: https://doi.org/10.1016/..
 
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2

An alpha-helical lid guides the target DNA toward catalysis..:

Saha, Aakash ; Ahsan, Mohd ; Arantes, Pablo R....
Nature Communications.  15 (2024)  1 - p. , 2024
Link: https://doi.org/10.1038/..
 
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3

GPU-Enhanced DFTB Metadynamics for Efficiently Predicting F..:

Kumar, Anshuman ; Arantes, Pablo R. ; Saha, Aakash..
Molecules.  28 (2023)  3 - p. 1277 , 2023
Link: https://doi.org/10.3390/..
 
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4

Unveiling the RNA-mediated allosteric activation discloses ..:

Sinha, Souvik ; Molina Vargas, Adrian M ; Arantes, Pablo R...
Nucleic Acids Research.  52 (2023)  2 - p. 906-920 , 2023
Link: https://doi.org/10.1093/..
 
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5

Electrostatic networks for characterization of allosteric p..:

Maschietto, Federica ; Kyro, Gregory W. ; Allen, Brandon...
Biophysical Journal.  122 (2023)  3 - p. 31a , 2023
Link: https://doi.org/10.1016/..
 
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6

Structure and dynamics of off-target effects in CRISPR-Cas9:

Arantes, Pablo R. ; Mitchell, Brandon P. ; Saha, Aakash...
Biophysical Journal.  122 (2023)  3 - p. 190a , 2023
Link: https://doi.org/10.1016/..
 
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7

Defining the allosteric role of RNA in the CRISPR-associate..:

Sinha, Souvik ; Molina Vergas, Adrian Moises ; Arantes, Pablo R....
Biophysical Journal.  122 (2023)  3 - p. 48a , 2023
Link: https://doi.org/10.1016/..
 
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8

Machines on Genes through the Computational Microscope:

Sinha, Souvik ; Pindi, Chinmai ; Ahsan, Mohd..
Journal of Chemical Theory and Computation.  , 2023
Link: https://doi.org/10.1021/..
 
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9

Principles of DNA cleavage in CRISPR-Cas9:

Ahsan, Mohammad ; Nierzwicki, Łukasz ; East, Kyle W....
Biophysical Journal.  122 (2023)  3 - p. 170a , 2023
Link: https://doi.org/10.1016/..
 
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10

Unveiling Cas8 dynamics and regulation of a transposon-enco..:

Patel, Amun C. ; Sinha, Souvik ; Arantes, Pablo R..
Biophysical Journal.  122 (2023)  3 - p. 216a , 2023
Link: https://doi.org/10.1016/..
 
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11

New design strategies for ultra-specific CRISPR-Cas13a-base..:

Molina Vargas, Adrian M ; Sinha, Souvik ; Osborn, Raven...
Nucleic Acids Research.  52 (2023)  2 - p. 921-939 , 2023
Link: https://doi.org/10.1093/..
 
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12

Substrate-independent activation pathways of the CRISPR-Cas..:

Wang, Jimin ; Maschietto, Federica ; Qiu, Tianyin...
Biophysical Journal.  122 (2023)  24 - p. 4635-4644 , 2023
Link: https://doi.org/10.1016/..
 
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13

Key role of an alpha-helical lid in driving the target DNA ..:

Saha, Aakash ; Ahsan, Mohd ; Arantes, Pablo R....
Biophysical Journal.  122 (2023)  3 - p. 468a , 2023
Link: https://doi.org/10.1016/..
 
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14

Twisting and swiveling domain motions in Cas9 to recognize ..:

Wang, Jimin ; Arantes, Pablo R. ; Ahsan, Mohd...
Frontiers in Molecular Biosciences.  9 (2023)  - p. , 2023
Link: https://doi.org/10.3389/..
 
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15

Structural basis for Cas9 off-target activity:

Pacesa, Martin ; Lin, Chun-Han ; Cléry, Antoine...
Cell.  185 (2022)  22 - p. 4067-4081.e21 , 2022
Link: https://doi.org/10.1016/..
 
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