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Arighi, Cecilia
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1

Extending BioMASS to construct mathematical models from ext..:

Arakane, Kiwamu ; Imoto, Hiroaki ; Ormersbach, Fabian..
Bioinformatics Advances.  4 (2024)  1 - p. , 2024
Link: https://doi.org/10.1093/..
 
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2

CAFA-evaluator: a Python tool for benchmarking ontological ..:

Piovesan, Damiano ; Zago, Davide ; Joshi, Parnal...
Bioinformatics Advances.  4 (2024)  1 - p. , 2024
Link: https://doi.org/10.1093/..
 
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3

Data-driven information extraction and enrichment of molecu..:

Smith, Ellery ; Paloots, Rahel ; Giagkos, Dimitris...
Bioinformatics Advances.  4 (2024)  1 - p. , 2024
Link: https://doi.org/10.1093/..
 
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4

DeGeCI 1.1: a web platform for gene annotation of mitochond..:

Fiedler, Lisa ; Bernt, Matthias ; Middendorf, Martin.
Bioinformatics Advances.  4 (2024)  1 - p. , 2024
Link: https://doi.org/10.1093/..
 
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5

MouseScholar: Evaluating an Image+Text Search System for Bi..:

, In: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM),
Trabucco, Juan Trelles ; Floricel, Carla ; Arighi, Cecilia... - p. 1473-1480 , 2023
Link: https://doi.org/10.1109/..
 
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6

Availability of web servers significantly boosts citations ..:

Song, Jiangning ; Kurgan, Lukasz ; Arighi, Cecilia
Bioinformatics Advances.  3 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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7

The Epilepsy Ontology: a community-based ontology tailored ..:

Sargsyan, Astghik ; Wegner, Philipp ; Gebel, Stephan...
Bioinformatics Advances.  3 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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8

Turtling: A Time-aware Neural Topic Model on NIH Grant Data:

Zhang, Ruiyi ; Duan, Ziheng ; Lee, Che Yu...
Bioinformatics Advances.  , 2023
Link: https://doi.org/10.1093/..
 
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9

Latent disease similarities and therapeutic repurposing pos..:

Kozawa, Satoshi ; Yokoyama, Hirona ; Urayama, Kyoji...
Bioinformatics Advances.  3 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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10

Enhancing biomedical search interfaces with images:

Trelles Trabucco, Juan ; Arighi, Cecilia ; Shatkay, Hagit..
Bioinformatics Advances.  3 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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11

Snekmer: a scalable pipeline for protein sequence fingerpri..:

Chang, Christine H ; Nelson, William C ; Jerger, Abby...
Bioinformatics Advances.  3 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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12

promor: a comprehensive R package for label-free proteomics..:

Ranathunge, Chathurani ; Patel, Sagar S ; Pinky, Lubna...
Bioinformatics Advances.  3 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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13

A cloud-based pipeline for analysis of FHIR and long-read d..:

Dunn, Tim ; Cosgun, Erdal ; Arighi, Cecilia
Bioinformatics Advances.  3 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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14

OntoloViz: a GUI for interactive visualization of ranked di..:

Ley, Matthias ; Heinzel, Andreas ; Fillinger, Lucas...
Bioinformatics Advances.  3 (2023)  1 - p. , 2023
Link: https://doi.org/10.1093/..
 
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15

MarkerGenie: an NLP-enabled text-mining system for biomedic..:

Gu, Wenhao ; Yang, Xiao ; Yang, Minhao...
Bioinformatics Advances.  2 (2022)  1 - p. , 2022
Link: https://doi.org/10.1093/..
 
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