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Břinda, Karel
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1

High-resolution genomic surveillance elucidates a multilaye..:

Che, You ; Xu, Xiaoqing ; Yang, Yu...
Microbiome.  10 (2022)  1 - p. , 2022
Link: https://doi.org/10.1186/..
 
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2

Conjugative plasmids interact with insertion sequences to s..:

Che, You ; Yang, Yu ; Xu, Xiaoqing...
Proceedings of the National Academy of Sciences.  118 (2021)  6 - p. , 2021
Link: https://doi.org/10.1073/..
 
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3

Optimal SARS-CoV-2 vaccine allocation using real-time attac..:

Tran, Thu Nguyen-Anh ; Wikle, Nathan B. ; Albert, Emmy...
BMC Medicine.  19 (2021)  1 - p. , 2021
Link: https://doi.org/10.1186/..
 
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4

Reply to Partridge et al.: Complementary bioinformatics and..:

Che, You ; Yang, Yu ; Xu, Xiaoqing...
Proceedings of the National Academy of Sciences.  118 (2021)  35 - p. , 2021
Link: https://doi.org/10.1073/..
 
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5

Reply to Shaw: Challenges for enrichment analysis of AMR ge..:

Che, You ; Yang, Yu ; Xu, Xiaoqing...
Proceedings of the National Academy of Sciences.  118 (2021)  21 - p. , 2021
Link: https://doi.org/10.1073/..
 
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6

Simplitigs as an efficient and scalable representation of d..:

Břinda, Karel ; Baym, Michael ; Kucherov, Gregory
Genome Biology.  22 (2021)  1 - p. , 2021
Link: https://doi.org/10.1186/..
 
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7

Rapid inference of antibiotic resistance and susceptibility..:

Břinda, Karel ; Callendrello, Alanna ; Ma, Kevin C....
Nature Microbiology.  5 (2020)  3 - p. 455-464 , 2020
Link: https://doi.org/10.1038/..
 
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8

Using Genetic Distance from Archived Samples for the Predic..:

MacFadden, Derek R. ; Coburn, Bryan ; Břinda, Karel...
Antimicrobial Agents and Chemotherapy.  64 (2020)  5 - p. , 2020
Link: https://doi.org/10.1128/..
 
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9

Spaced seeds improvek-mer-based metagenomic classification:

Břinda, Karel ; Sykulski, Maciej ; Kucherov, Gregory
Bioinformatics.  31 (2015)  22 - p. 3584-3592 , 2015
Link: https://doi.org/10.1093/..
 
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10

RNF: a general framework to evaluate NGS read mappers:

Břinda, Karel ; Boeva, Valentina ; Kucherov, Gregory
Bioinformatics.  32 (2015)  1 - p. 136-139 , 2015
Link: https://doi.org/10.1093/..
 
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11

Abelian complexity of infinite words associated with quadra..:

Balková, L'ubomíra ; Břinda, Karel ; Turek, Ondřej
Theoretical Computer Science.  412 (2011)  45 - p. 6252-6260 , 2011
Link: https://doi.org/10.1016/..
 
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12

Efficient and Robust Search of Microbial Genomes via Phylog..:

Břinda, Karel ; Lima, Leandro ; Pignotti, Simone...
info:eu-repo/semantics/altIdentifier/doi/10.1101/2023.04.15.536996.  , 2023
Link: https://hal.science/hal-..
 
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13

Efficient and Robust Search of Microbial Genomes via Phylog..:

Břinda, Karel ; Lima, Leandro ; Pignotti, Simone...
info:eu-repo/semantics/altIdentifier/doi/10.1101/2023.04.15.536996.  , 2023
Link: https://hal.science/hal-..
 
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14

Masked superstrings as a unified framework for textual k-me..:

Sladký, Ondřej ; Veselý, Pavel ; Břinda, Karel
info:eu-repo/semantics/altIdentifier/doi/10.1101/2023.02.01.526717.  , 2023
Link: https://inria.hal.scienc..
 
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15

Efficient and Robust Search of Microbial Genomes via Phylog..:

Břinda, Karel ; Lima, Leandro ; Pignotti, Simone...
info:eu-repo/semantics/altIdentifier/doi/10.1101/2023.04.15.536996.  , 2023
Link: https://hal.science/hal-..
 
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