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Baker, Dannon
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1

The Galaxy platform for accessible, reproducible, and colla..:

The Galaxy Community ; Abueg, Linelle Ann L ; Afgan, Enis...
Nucleic Acids Research.  52 (2024)  W1 - p. W83-W94 , 2024
Link: https://doi.org/10.1093/..
 
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2

Fast and accurate genome-wide predictions and structural mo..:

Guerler, Aysam ; Baker, Dannon ; van den Beek, Marius...
BMC Bioinformatics.  24 (2023)  1 - p. , 2023
Link: https://doi.org/10.1186/..
 
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3

Ready-to-use public infrastructure for global SARS-CoV-2 mo..:

Maier, Wolfgang ; Bray, Simon ; van den Beek, Marius...
Nature Biotechnology.  39 (2021)  10 - p. 1178-1179 , 2021
Link: https://doi.org/10.1038/..
 
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4

No more business as usual: Agile and effective responses to..:

Baker, Dannon ; van den Beek, Marius ; Blankenberg, Daniel...
PLOS Pathogens.  16 (2020)  8 - p. e1008643 , 2020
Link: https://doi.org/10.1371/..
 
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5

The Galaxy platform for accessible, reproducible and collab..:

Afgan, Enis ; Baker, Dannon ; Batut, Bérénice...
Nucleic Acids Research.  46 (2018)  W1 - p. W537-W544 , 2018
Link: https://doi.org/10.1093/..
 
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6

A guide and best practices for R/Bioconductor tool integrat..:

Turaga, Nitesh ; Freeberg, Mallory A. ; Baker, Dannon...
F1000Research.  5 (2016)  - p. 2757 , 2016
Link: https://doi.org/10.12688..
 
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7

The Galaxy platform for accessible, reproducible and collab..:

Afgan, Enis ; Baker, Dannon ; van den Beek, Marius...
Nucleic Acids Research.  44 (2016)  W1 - p. W3-W10 , 2016
Link: https://doi.org/10.1093/..
 
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8

Enabling cloud bursting for life sciences within Galaxy:

Afgan, Enis ; Coraor, Nate ; Chilton, John...
Concurrency and Computation: Practice and Experience.  27 (2015)  16 - p. 4330-4343 , 2015
Link: https://doi.org/10.1002/..
 
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9

Galaxy cluster to cloud - genomics at scale:

, In: Proceedings of the 9th Gateway Computing Environments Workshop,
Afgan, Enis ; Baker, Dannon ; Chilton, John... - p. 47-50 , 2014
Link: https://dl.acm.org/doi/1..
 
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10

Harnessing cloud computing with Galaxy Cloud:

Afgan, Enis ; Baker, Dannon ; Coraor, Nate...
Nature Biotechnology.  29 (2011)  11 - p. 972-974 , 2011
Link: https://doi.org/10.1038/..
 
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11

A reference model for deploying applications in virtualized..:

Afgan, Enis ; Baker, Dannon ; Team, the Galaxy..
Concurrency and Computation: Practice and Experience.  24 (2011)  12 - p. 1349-1361 , 2011
Link: https://doi.org/10.1002/..
 
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12

Galaxy CloudMan: delivering cloud compute clusters:

Afgan, Enis ; Baker, Dannon ; Coraor, Nate...
BMC Bioinformatics.  11 (2010)  S12 - p. , 2010
Link: https://doi.org/10.1186/..
 
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13

Fast and accurate genome-wide predictions and structural mo..:

Guerler, Aysam ; Baker, Dannon ; van den Beek, Marius...
https://repository.cshl.edu/id/eprint/41020/1/Fast%20and%20accurate%20genome-wide%20predictions%20and%20structural%20modeling%20of%20protein-protein%20interactions%20using%20Galaxy.pdf.  , 2023
Link: https://repository.cshl...
 
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14

Inverting the model of genomics data sharing with the NHGRI..:

Schatz, Michael C ; Philippakis, Anthony A ; Afgan, Enis...
https://repository.cshl.edu/id/eprint/40503/1/2022.Schatz.genomics_data_sharing.pdf.  , 2022
Link: https://repository.cshl...
 
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15

The Galaxy platform for accessible, reproducible and collab..:

Afgan, Enis ; Nekrutenko, Anton ; Grüning, Bjórn A...
info:eu-repo/semantics/altIdentifier/pmid/35446428.  , 2022
Link: http://hdl.handle.net/24..
 
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