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Balhoff, J. P
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1

Matching arthropod anatomy ontologies to the Hymenoptera An..:

Bertone, M. A. ; Miko, I. ; Yoder, M. J....
Database.  2013 (2013)  0 - p. bas057-bas057 , 2013
Link: https://doi.org/10.1093/..
 
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2

Scowl: a Scala DSL for programming with the OWL API:

P Balhoff, James
The Journal of Open Source Software.  1 (2016)  1 - p. 23 , 2016
Link: https://doi.org/10.21105..
 
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3

The Ontology of Biological Attributes (OBA)—computational t..:

Stefancsik, Ray ; Balhoff, James P. ; Balk, Meghan A....
Mammalian Genome.  34 (2023)  3 - p. 364-378 , 2023
Link: https://doi.org/10.1007/..
 
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4

rphenoscate: An R package for semantics‐aware evolutionary ..:

Porto, Diego S. ; Tarasov, Sergei ; Charpentier, Caleb...
Methods in Ecology and Evolution.  14 (2023)  10 - p. 2531-2540 , 2023
Link: https://doi.org/10.1111/..
 
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5

The Human Phenotype Ontology in 2024: phenotypes around the..:

Gargano, Michael A ; Matentzoglu, Nicolas ; Coleman, Ben...
Nucleic Acids Research.  52 (2023)  D1 - p. D1333-D1346 , 2023
Link: https://doi.org/10.1093/..
 
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6

Discovering Novel Biological Traits From Images Using Phylo..:

, In: Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining,
Elhamod, Mohannad ; Khurana, Mridul ; Manogaran, Harish Babu... - p. 3966-3978 , 2023
Link: https://dl.acm.org/doi/1..
 
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7

Assessing Bayesian Phylogenetic Information Content of Morp..:

Porto, Diego S ; Dahdul, Wasila M ; Lapp, Hilmar...
Systematic Biology.  71 (2022)  6 - p. 1290-1306 , 2022
Link: https://doi.org/10.1093/..
 
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8

A Simple Standard for Sharing Ontological Mappings (SSSOM):

Matentzoglu, Nicolas ; Balhoff, James P ; Bello, Susan M...
Database.  2022 (2022)  - p. , 2022
Link: https://doi.org/10.1093/..
 
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9

Ontology Development Kit: a toolkit for building, maintaini..:

Matentzoglu, Nicolas ; Goutte-Gattat, Damien ; Tan, Shawn Zheng Kai...
Database.  2022 (2022)  - p. , 2022
Link: https://doi.org/10.1093/..
 
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10

Reactome and the Gene Ontology: digital convergence of data..:

Good, Benjamin M ; Van Auken, Kimberly ; Hill, David P...
Bioinformatics.  37 (2021)  19 - p. 3343-3348 , 2021
Link: https://doi.org/10.1093/..
 
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11

OBO Foundry in 2021: operationalizing open data principles ..:

Jackson, Rebecca ; Matentzoglu, Nicolas ; Overton, James A...
Database.  2021 (2021)  - p. , 2021
Link: https://doi.org/10.1093/..
 
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12

KG-COVID-19: A Framework to Produce Customized Knowledge Gr..:

Reese, Justin T. ; Unni, Deepak ; Callahan, Tiffany J....
Patterns.  2 (2021)  1 - p. 100155 , 2021
Link: https://doi.org/10.1016/..
 
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13

Transforming the study of organisms: Phenomic data models a..:

Thessen, Anne E. ; Walls, Ramona L. ; Vogt, Lars...
PLOS Computational Biology.  16 (2020)  11 - p. e1008376 , 2020
Link: https://doi.org/10.1371/..
 
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14

ROBOT: A Tool for Automating Ontology Workflows:

Jackson, Rebecca C. ; Balhoff, James P. ; Douglass, Eric...
BMC Bioinformatics.  20 (2019)  1 - p. , 2019
Link: https://doi.org/10.1186/..
 
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15

A Logical Model of Homology for Comparative Biology:

Vision, Todd J ; Mungall, Christopher J ; Lapp, Hilmar...
Systematic Biology.  69 (2019)  2 - p. 345-362 , 2019
Link: https://doi.org/10.1093/..
 
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