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Berenberg, Daniel
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1

OpenFold: retraining AlphaFold2 yields new insights into it..:

Ahdritz, Gustaf ; Bouatta, Nazim ; Floristean, Christina...
Nature Methods.  21 (2024)  8 - p. 1514-1524 , 2024
Link: https://doi.org/10.1038/..
 
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2

Protein remote homology detection and structural alignment ..:

Hamamsy, Tymor ; Morton, James T. ; Blackwell, Robert...
Nature Biotechnology.  42 (2023)  6 - p. 975-985 , 2023
Link: https://doi.org/10.1038/..
 
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3

Sequence-structure-function relationships in the microbial ..:

Koehler Leman, Julia ; Szczerbiak, Pawel ; Renfrew, P. Douglas...
Nature Communications.  14 (2023)  1 - p. , 2023
Link: https://doi.org/10.1038/..
 
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4

Structure-based protein function prediction using graph con..:

Gligorijević, Vladimir ; Renfrew, P. Douglas ; Kosciolek, Tomasz...
Nature Communications.  12 (2021)  1 - p. , 2021
Link: https://doi.org/10.1038/..
 
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5

Efficient Crowd Exploration of Large Networks: The Case of ..:

Berenberg, Daniel ; Bagrow, James P.
Proceedings of the ACM on Human-Computer Interaction.  2 (2018)  CSCW - p. 1-25 , 2018
Link: https://doi.org/10.1145/..
 
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6

Efficient Crowd Exploration of Large Networks : The Case..:

Berenberg, Daniel ; Bagrow, James P.
Proceedings of the ACM on Human-Computer Interaction.  2 (2018)  CSCW - p. 1-25 , 2018
Link: https://dl.acm.org/doi/1..
 
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7

OpenProteinSet: Training data for structural biology at sca..:

Ahdritz, Gustaf ; Bouatta, Nazim ; Kadyan, Sachin...
http://arxiv.org/abs/2308.05326.  , 2023
Link: http://arxiv.org/abs/230..
 
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8

Sequence-structure-function relationships in the microbial ..:

Leman, Julia Koehler ; Szczerbiak, Pawel ; Renfrew, P. Douglas...
10.1038/s41467-023-37896-w.  , 2023
Link: http://hdl.handle.net/10..
 
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9

Protein Discovery with Discrete Walk-Jump Sampling:

Frey, Nathan C ; Berenberg, Daniel ; Zadorozhny, Karina...
http://arxiv.org/abs/2306.12360.  , 2023
Link: http://arxiv.org/abs/230..
 
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10

Sequence-structure-function relationships in the microbial ..:

Koehler Leman, Julia ; Szczerbiak, Pawel ; Renfrew, P Douglas...
qt201884n7.  , 2023
Link: https://escholarship.org..
 
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11

Multi-segment preserving sampling for deep manifold sampler:

Berenberg, Daniel ; Lee, Jae Hyeon ; Kelow, Simon...
http://arxiv.org/abs/2205.04259.  , 2022
Link: http://arxiv.org/abs/220..
 
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12

Sequence-structure-function relationships in the microbial ..:

Koehler Leman, Julia ; Szczerbiak, Pawel ; Renfrew, P. Douglas...
doi:10.5281/zenodo.6477241.  , 2022
Link: https://zenodo.org/recor..
 
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13

Sequence-structure-function relationships in the microbial ..:

Koehler Leman, Julia ; Szczerbiak, Pawel ; Renfrew, P. Douglas...
doi:10.5281/zenodo.6477241.  , 2022
Link: https://zenodo.org/recor..
 
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14

Structure-based protein function prediction using graph con..:

Gligorijević, Vladimir ; Renfrew, P Douglas ; Kosciolek, Tomasz...
qt01h231b2.  , 2021
Link: https://escholarship.org..
 
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15

Structure-based protein function prediction using graph con..:

Gligorijević, Vladimir ; Renfrew, P. Douglas ; Kościółek, Tomasz...
Nature Communications, T. 12.  , 2021
Link: https://ruj.uj.edu.pl/xm..
 
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