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Bhavya Papudeshi
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1

Hybracter: enabling scalable, automated, complete and accur..:

Bouras, George ; Houtak, Ghais ; Wick, Ryan R....
Microbial Genomics.  10 (2024)  5 - p. , 2024
Link: https://doi.org/10.1099/..
 
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2

Dnaapler: A tool to reorient circular microbialgenomes:

Bouras, George ; Grigson, Susanna R. ; Papudeshi, Bhavya..
Journal of Open Source Software.  9 (2024)  93 - p. 5968 , 2024
Link: https://doi.org/10.21105..
 
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3

Solving genomic puzzles: computational methods for metageno..:

Mallawaarachchi, Vijini ; Wickramarachchi, Anuradha ; Xue, Hansheng...
Briefings in Bioinformatics.  25 (2024)  5 - p. , 2024
Link: https://doi.org/10.1093/..
 
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4

Koverage: Read-coverage analysis for massive(meta)genomics ..:

Roach, Michael J. ; Hart, Bradley J. ; Beecroft, Sarah J....
Journal of Open Source Software.  9 (2024)  94 - p. 6235 , 2024
Link: https://doi.org/10.21105..
 
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5

A novel genus of Pectobacterium bacteriophages display broa..:

Pedersen, Julie Stenberg ; Carstens, Alexander Byth ; Rothgard, Magnus Mulbjerg...
Virus Research.  347 (2024)  - p. 199435 , 2024
Link: https://doi.org/10.1016/..
 
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6

Emergent community architecture despite distinct diversity ..:

Doane, Michael P. ; Reed, Michael B. ; McKerral, Jody...
Scientific Reports.  13 (2023)  1 - p. , 2023
Link: https://doi.org/10.1038/..
 
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7

Host Association and Spatial Proximity Shape but Do Not Con..:

Papudeshi, Bhavya ; Rusch, Douglas B. ; VanInsberghe, David...
mBio.  14 (2023)  3 - p. , 2023
Link: https://doi.org/10.1128/..
 
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8

Stingray epidermal microbiomes are species-specific with lo..:

Kerr, Emma N. ; Papudeshi, Bhavya ; Haggerty, Miranda...
Frontiers in Microbiology.  14 (2023)  - p. , 2023
Link: https://doi.org/10.3389/..
 
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9

Host interactions of novel Crassvirales species belonging t..:

Papudeshi, Bhavya ; Vega, Alejandro A. ; Souza, Cole...
Microbial Genomics.  9 (2023)  9 - p. , 2023
Link: https://doi.org/10.1099/..
 
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10

Phables: from fragmented assemblies to high-quality bacteri..:

Mallawaarachchi, Vijini ; Roach, Michael J ; Decewicz, Przemyslaw...
Bioinformatics.  39 (2023)  10 - p. , 2023
Link: https://doi.org/10.1093/..
 
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11

Knowing and Naming: Phage Annotation and Nomenclature for P..:

Grigson, Susanna R ; Giles, Sarah K ; Edwards, Robert A.
Clinical Infectious Diseases.  77 (2023)  Supplement_5 - p. S352-S359 , 2023
Link: https://doi.org/10.1093/..
 
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12

The human gut virome: composition, colonization, interactio..:

Pargin, Evan ; Roach, Michael J. ; Skye, Amber...
Frontiers in Microbiology.  14 (2023)  - p. , 2023
Link: https://doi.org/10.3389/..
 
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13

Coral and Seawater Metagenomes Reveal Key Microbial Functio..:

Lima, Laís F. O. ; Alker, Amanda T. ; Papudeshi, Bhavya...
Microbial Ecology.  86 (2022)  1 - p. 392-407 , 2022
Link: https://doi.org/10.1007/..
 
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14

The StkSR Two-Component System Influences Colistin Resistan..:

Giles, Sarah K. ; Stroeher, Uwe H. ; Papudeshi, Bhavya...
Microorganisms.  10 (2022)  5 - p. 985 , 2022
Link: https://doi.org/10.3390/..
 
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15

Phage Diving: An Exploration of the Carcharhinid Shark Epid..:

Hesse, Ryan D. ; Roach, Michael ; Kerr, Emma N....
Viruses.  14 (2022)  9 - p. 1969 , 2022
Link: https://doi.org/10.3390/..
 
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