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Boettiger, Alistair N.
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1

Boundary stacking interactions enable cross-TAD enhancer–pr..:

Hung, Tzu-Chiao ; Kingsley, David M. ; Boettiger, Alistair N.
Nature Genetics.  56 (2024)  2 - p. 306-314 , 2024
Link: https://doi.org/10.1038/..
 
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2

Loop stacking organizes genome folding from TADs to chromos..:

Hafner, Antonina ; Park, Minhee ; Berger, Scott E....
Molecular Cell.  83 (2023)  9 - p. 1377-1392.e6 , 2023
Link: https://doi.org/10.1016/..
 
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3

Polycomb-mediated genome architecture enables long-range sp..:

Kraft, Katerina ; Yost, Kathryn E. ; Murphy, Sedona E....
Proceedings of the National Academy of Sciences.  119 (2022)  22 - p. , 2022
Link: https://doi.org/10.1073/..
 
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4

Deep learning connects DNA traces to transcription to revea..:

Rajpurkar, Aparna R. ; Mateo, Leslie J. ; Murphy, Sedona E..
Nature Communications.  12 (2021)  1 - p. , 2021
Link: https://doi.org/10.1038/..
 
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5

mSWI/SNF promotes Polycomb repression both directly and thr..:

Weber, Christopher M. ; Hafner, Antonina ; Kirkland, Jacob G....
Nature Structural & Molecular Biology.  28 (2021)  6 - p. 501-511 , 2021
Link: https://doi.org/10.1038/..
 
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6

Tracing DNA paths and RNA profiles in cultured cells and ti..:

Mateo, Leslie J. ; Sinnott-Armstrong, Nasa ; Boettiger, Alistair N.
Nature Protocols.  16 (2021)  3 - p. 1647-1713 , 2021
Link: https://doi.org/10.1038/..
 
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7

How subtle changes in 3D structure can create large changes..:

Xiao, Jordan Yupeng ; Hafner, Antonina ; Boettiger, Alistair N
eLife.  10 (2021)  - p. , 2021
Link: https://doi.org/10.7554/..
 
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8

Atlas of Subcellular RNA Localization Revealed by APEX-Seq:

Fazal, Furqan M. ; Han, Shuo ; Parker, Kevin R....
Cell.  178 (2019)  2 - p. 473-490.e26 , 2019
Link: https://doi.org/10.1016/..
 
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9

Visualizing DNA folding and RNA in embryos at single-cell r..:

Mateo, Leslie J. ; Murphy, Sedona E. ; Hafner, Antonina...
Nature.  568 (2019)  7750 - p. 49-54 , 2019
Link: https://doi.org/10.1038/..
 
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10

Super-resolution chromatin tracing reveals domains and coop..:

Bintu, Bogdan ; Mateo, Leslie J. ; Su, Jun-Han...
Science.  362 (2018)  6413 - p. , 2018
Link: https://doi.org/10.1126/..
 
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11

Super-resolution imaging reveals distinct chromatin folding..:

Boettiger, Alistair N. ; Bintu, Bogdan ; Moffitt, Jeffrey R....
Nature.  529 (2016)  7586 - p. 418-422 , 2016
Link: https://doi.org/10.1038/..
 
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12

Chromatin topology is coupled to Polycomb group protein sub..:

Wani, Ajazul H. ; Boettiger, Alistair N. ; Schorderet, Patrick...
Nature Communications.  7 (2016)  1 - p. , 2016
Link: https://doi.org/10.1038/..
 
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13

Spatial organization shapes the turnover of a bacterial tra..:

Moffitt, Jeffrey R ; Pandey, Shristi ; Boettiger, Alistair N..
eLife.  5 (2016)  - p. , 2016
Link: https://doi.org/10.7554/..
 
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14

Spatially resolved, highly multiplexed RNA profiling in sin..:

Chen, Kok Hao ; Boettiger, Alistair N. ; Moffitt, Jeffrey R...
Science.  348 (2015)  6233 - p. , 2015
Link: https://doi.org/10.1126/..
 
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15

Spatially resolved, highly multiplexed RNA profiling in sin..:

Chen, Kok Hao ; Boettiger, Alistair N. ; Moffitt, Jeffrey R...
Science.  348 (2015)  6233 - p. 412 ff. , 2015
Link: http://www.jstor.org/sta..
 
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