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Bonvin, Alexandre M. J. J.
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1

ARCTIC-3D: automatic retrieval and clustering of interfaces..:

Giulini, Marco ; Honorato, Rodrigo V. ; Rivera, Jesús L..
Communications Biology.  7 (2024)  1 - p. , 2024
Link: https://doi.org/10.1038/..
 
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2

DeepRank-GNN-esm: a graph neural network for scoring protei..:

Xu, Xiaotong ; Bonvin, Alexandre M J J ; Gromiha, Michael
Bioinformatics Advances.  4 (2024)  1 - p. , 2024
Link: https://doi.org/10.1093/..
 
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3

The HADDOCK2.4 web server for integrative modeling of biomo..:

Honorato, Rodrigo V. ; Trellet, Mikael E. ; Jiménez-García, Brian...
Nature Protocols.  , 2024
Link: https://doi.org/10.1038/..
 
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4

CAPRI-Q: The CAPRI resource evaluating the quality of predi..:

Collins, Keeley W. ; Copeland, Matthew M. ; Brysbaert, Guillaume...
Journal of Molecular Biology.  , 2024
Link: https://doi.org/10.1016/..
 
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5

Impact of AlphaFold on structure prediction of protein comp..:

Lensink, Marc F. ; Brysbaert, Guillaume ; Raouraoua, Nessim...
Proteins: Structure, Function, and Bioinformatics.  91 (2023)  12 - p. 1658-1683 , 2023
Link: https://doi.org/10.1002/..
 
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6

Discriminating physiological from non‐physiological interfa..:

Schweke, Hugo ; Xu, Qifang ; Tauriello, Gerardo...
PROTEOMICS.  , 2023
Link: https://doi.org/10.1002/..
 
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7

MetaScore: A Novel Machine-Learning-Based Approach to Impro..:

Jung, Yong ; Geng, Cunliang ; Bonvin, Alexandre M. J. J...
Biomolecules.  13 (2023)  1 - p. 121 , 2023
Link: https://doi.org/10.3390/..
 
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8

An antibiotic from an uncultured bacterium binds to an immu..:

Shukla, Rhythm ; Peoples, Aaron J. ; Ludwig, Kevin C....
Cell.  186 (2023)  19 - p. 4059-4073.e27 , 2023
Link: https://doi.org/10.1016/..
 
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9

Improving the quality of co‐evolution intermolecular contac..:

van Keulen, Siri C. ; Bonvin, Alexandre M. J. J.
Proteins: Structure, Function, and Bioinformatics.  91 (2023)  10 - p. 1407-1416 , 2023
Link: https://doi.org/10.1002/..
 
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10

PPARγ lipodystrophy mutants reveal intermolecular interacti..:

Madsen, Maria Stahl ; Broekema, Marjoleine F. ; Madsen, Martin Rønn...
Nature Communications.  13 (2022)  1 - p. , 2022
Link: https://doi.org/10.1038/..
 
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11

Pathogen-sugar interactions revealed by universal saturatio..:

Buchanan, Charles J. ; Gaunt, Ben ; Harrison, Peter J....
Science.  377 (2022)  6604 - p. , 2022
Link: https://doi.org/10.1126/..
 
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12

Cyclization and Docking Protocol for Cyclic Peptide–Protein..:

Charitou, Vicky ; van Keulen, Siri C. ; Bonvin, Alexandre M. J. J.
Journal of Chemical Theory and Computation.  18 (2022)  6 - p. 4027-4040 , 2022
Link: https://doi.org/10.1021/..
 
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13

Using machine‐learning‐driven approaches to boost hot‐spot'..:

Rosário‐Ferreira, Nícia ; Bonvin, Alexandre M. J. J. ; Moreira, Irina S.
WIREs Computational Molecular Science.  12 (2022)  5 - p. , 2022
Link: https://doi.org/10.1002/..
 
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14

Teixobactin kills bacteria by a two-pronged attack on the c..:

Shukla, Rhythm ; Lavore, Francesca ; Maity, Sourav...
Nature.  608 (2022)  7922 - p. 390-396 , 2022
Link: https://doi.org/10.1038/..
 
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15

DeepRank-GNN: a graph neural network framework to learn pat..:

Réau, Manon ; Renaud, Nicolas ; Xue, Li C..
Bioinformatics.  39 (2022)  1 - p. , 2022
Link: https://doi.org/10.1093/..
 
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