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Bussi, Giovanni
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1

Molecular dynamics simulations reveal the parallel stranded..:

Pokorná, Pavlína ; Mlýnský, Vojtěch ; Bussi, Giovanni..
International Journal of Biological Macromolecules.  261 (2024)  - p. 129712 , 2024
Link: https://doi.org/10.1016/..
 
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2

Boosting Ensemble Refinement with Transferable Force-Field ..:

Gilardoni, Ivan ; Fröhlking, Thorben ; Bussi, Giovanni
The Journal of Physical Chemistry Letters.  15 (2024)  5 - p. 1204-1210 , 2024
Link: https://doi.org/10.1021/..
 
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3

Molecular Dynamics Simulations with Grand-Canonical Reweigh..:

Calonaci, Nicola ; Bernetti, Mattia ; Jones, Alisha..
Journal of Chemical Theory and Computation.  19 (2023)  12 - p. 3672-3685 , 2023
Link: https://doi.org/10.1021/..
 
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4

Atomistic Picture of Opening–Closing Dynamics of DNA Hollid..:

Zhang, Zhengyue ; Šponer, Jiří ; Bussi, Giovanni...
Journal of Chemical Information and Modeling.  63 (2023)  9 - p. 2794-2809 , 2023
Link: https://doi.org/10.1021/..
 
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5

Integrating experimental data with molecular simulations to..:

Bernetti, Mattia ; Bussi, Giovanni
Current Opinion in Structural Biology.  78 (2023)  - p. 102503 , 2023
Link: https://doi.org/10.1016/..
 
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6

Alchemical Metadynamics: Adding Alchemical Variables to Met..:

Hsu, Wei-Tse ; Piomponi, Valerio ; Merz, Pascal T...
Journal of Chemical Theory and Computation.  , 2023
Link: https://doi.org/10.1021/..
 
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7

Simultaneous refinement of molecular dynamics ensembles and..:

Fröhlking, Thorben ; Bernetti, Mattia ; Bussi, Giovanni
The Journal of Chemical Physics.  158 (2023)  21 - p. , 2023
Link: https://doi.org/10.1063/..
 
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8

Unraveling disease mechanisms using molecular modeling of b..:

Louise Grothaus, Isabell ; Bussi, Giovanni ; Kirstein, Janine..
Biophysical Journal.  122 (2023)  3 - p. 481a , 2023
Link: https://doi.org/10.1016/..
 
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9

Molecular Dynamics Simulations of Chemically Modified Ribon..:

, In: RNA Technologies; RNA Structure and Function,
Piomponi, Valerio ; Bernetti, Mattia ; Bussi, Giovanni - p. 595-612 , 2023
Link: https://doi.org/10.1007/..
 
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10

Molecular Simulations Matching Denaturation Experiments for..:

Piomponi, Valerio ; Fröhlking, Thorben ; Bernetti, Mattia.
ACS Central Science.  8 (2022)  8 - p. 1218-1228 , 2022
Link: https://doi.org/10.1021/..
 
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11

Molecular states and spin crossover of hemin studied by DNA..:

Dutta, Anushree ; Tapio, Kosti ; Suma, Antonio...
Nanoscale.  14 (2022)  44 - p. 16467-16478 , 2022
Link: https://doi.org/10.1039/..
 
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12

Exploration, Representation, and Rationalization of the Con..:

Grothaus, Isabell Louise ; Bussi, Giovanni ; Colombi Ciacchi, Lucio
Journal of Chemical Information and Modeling.  62 (2022)  20 - p. 4992-5008 , 2022
Link: https://doi.org/10.1021/..
 
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13

Biomotors, viral assembly, and RNA nanobiotechnology: Curre..:

Rolband, Lewis ; Beasock, Damian ; Wang, Yang...
Computational and Structural Biotechnology Journal.  20 (2022)  - p. 6120-6137 , 2022
Link: https://doi.org/10.1016/..
 
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14

Molecular Dynamics of Solids at Constant Pressure and Stres..:

Del Tatto, Vittorio ; Raiteri, Paolo ; Bernetti, Mattia.
Applied Sciences.  12 (2022)  3 - p. 1139 , 2022
Link: https://doi.org/10.3390/..
 
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15

Automatic Learning of Hydrogen-Bond Fixes in the AMBER RNA ..:

Fröhlking, Thorben ; Mlýnský, Vojtěch ; Janeček, Michal...
Journal of Chemical Theory and Computation.  18 (2022)  7 - p. 4490-4502 , 2022
Link: https://doi.org/10.1021/..
 
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