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Clausen, Philip T L C
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1

The European livestock resistome:

Munk, Patrick ; Yang, Dongsheng ; Röder, Timo...
mSystems.  9 (2024)  4 - p. , 2024
Link: https://doi.org/10.1128/..
 
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2

NanoMGT: Marker gene typing of low complexity mono-species ..:

Hallgren, Malte B ; Clausen, Philip T L C ; Aarestrup, Frank M
Biology Methods and Protocols.  , 2024
Link: https://doi.org/10.1093/..
 
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3

ARGprofiler—a pipeline for large-scale analysis of antimicr..:

Martiny, Hannah-Marie ; Pyrounakis, Nikiforos ; Petersen, Thomas N...
Bioinformatics.  40 (2024)  3 - p. , 2024
Link: https://doi.org/10.1093/..
 
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4

Nanopore sequencing technology for clinical diagnosis of in..:

Kumburu, Happiness H. ; Shayo, Mariana ; van Zwetslaar, Marco...
Heliyon.  9 (2023)  7 - p. e17439 , 2023
Link: https://doi.org/10.1016/..
 
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5

PlasmidHostFinder: Prediction of Plasmid Hosts Using Random..:

Aytan-Aktug, Derya ; Clausen, Philip T. L. C. ; Szarvas, Judit...
mSystems.  7 (2022)  2 - p. , 2022
Link: https://doi.org/10.1128/..
 
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6

Scaling neighbor joining to one million taxa with dynamic a..:

Clausen, Philip T L C ; Schwartz, Russell
Bioinformatics.  39 (2022)  1 - p. , 2022
Link: https://doi.org/10.1093/..
 
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7

Metagenomic DNA sequencing for semi-quantitative pathogen d..:

Janes, Victoria A ; Matamoros, Sébastien ; Munk, Patrick...
The Lancet Microbe.  3 (2022)  8 - p. e588-e597 , 2022
Link: https://doi.org/10.1016/..
 
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8

Critical Assessment of Metagenome Interpretation: the secon..:

Meyer, Fernando ; Fritz, Adrian ; Deng, Zhi-Luo...
Nature Methods.  19 (2022)  4 - p. 429-440 , 2022
Link: https://doi.org/10.1038/..
 
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9

MINTyper: an outbreak-detection method for accurate and rap..:

Hallgren, Malte B ; Overballe-Petersen, Søren ; Lund, Ole..
Biology Methods and Protocols.  6 (2021)  1 - p. , 2021
Link: https://doi.org/10.1093/..
 
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10

Automated download and clean-up of family-specific database..:

Allesøe, Rosa L ; Lemvigh, Camilla K ; Phan, My V T...
Bioinformatics.  37 (2020)  5 - p. 705-710 , 2020
Link: https://doi.org/10.1093/..
 
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11

Metaphylogenetic analysis of global sewage reveals that bac..:

Ahrenfeldt, Johanne ; Waisi, Madina ; Loft, Isabella C....
Scientific Reports.  10 (2020)  1 - p. , 2020
Link: https://doi.org/10.1038/..
 
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12

CCMetagen: comprehensive and accurate identification of euk..:

Marcelino, Vanessa R. ; Clausen, Philip T. L. C. ; Buchmann, Jan P....
Genome Biology.  21 (2020)  1 - p. , 2020
Link: https://doi.org/10.1186/..
 
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13

LRE-Finder, a Web tool for detection of the 23S rRNA mutati..:

Hasman, Henrik ; Clausen, Philip T L C ; Kaya, Hülya...
Journal of Antimicrobial Chemotherapy.  74 (2019)  6 - p. 1473-1476 , 2019
Link: https://doi.org/10.1093/..
 
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14

Improved Resistance Prediction in Mycobacterium tuberculosi..:

Johnsen, Camilla Hundahl ; Clausen, Philip T. L. C. ; Aarestrup, Frank M..
Frontiers in Microbiology.  10 (2019)  - p. , 2019
Link: https://doi.org/10.3389/..
 
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15

Rapid and precise alignment of raw reads against redundant ..:

Clausen, Philip T. L. C. ; Aarestrup, Frank M. ; Lund, Ole
BMC Bioinformatics.  19 (2018)  1 - p. , 2018
Link: https://doi.org/10.1186/..
 
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