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Cumbo, Fabio
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1

The Galaxy platform for accessible, reproducible, and colla..:

The Galaxy Community ; Abueg, Linelle Ann L ; Afgan, Enis...
Nucleic Acids Research.  52 (2024)  W1 - p. W83-W94 , 2024
Link: https://doi.org/10.1093/..
 
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2

Neuroblastoma is associated with alterations in gut microbi..:

Valles-Colomer, Mireia ; Manghi, Paolo ; Cumbo, Fabio...
eBioMedicine.  99 (2024)  - p. 104917 , 2024
Link: https://doi.org/10.1016/..
 
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3

Homozygous EPRS1 missense variant causing hypomyelinating l..:

Khan, Debjit ; Ramachandiran, Iyappan ; Vasu, Kommireddy...
Nature Communications.  15 (2024)  1 - p. , 2024
Link: https://doi.org/10.1038/..
 
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4

A Perspective on Protein Structure Prediction Using Quantum..:

Doga, Hakan ; Raubenolt, Bryan ; Cumbo, Fabio...
Journal of Chemical Theory and Computation.  20 (2024)  9 - p. 3359-3378 , 2024
Link: https://doi.org/10.1021/..
 
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5

MetaPhlAn 4 profiling of unknown species-level genome bins ..:

Manghi, Paolo ; Blanco-Míguez, Aitor ; Manara, Serena...
Cell Reports.  42 (2023)  5 - p. 112464 , 2023
Link: https://doi.org/10.1016/..
 
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6

An ontology-based approach for modelling and querying Alzhe..:

Taglino, Francesco ; Cumbo, Fabio ; Antognoli, Giulia...
BMC Medical Informatics and Decision Making.  23 (2023)  1 - p. , 2023
Link: https://doi.org/10.1186/..
 
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7

Extending and improving metagenomic taxonomic profiling wit..:

Blanco-Míguez, Aitor ; Beghini, Francesco ; Cumbo, Fabio...
Nature Biotechnology.  41 (2023)  11 - p. 1633-1644 , 2023
Link: https://doi.org/10.1038/..
 
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8

Ten quick tips for avoiding pitfalls in multi-omics data in..:

Chicco, Davide ; Cumbo, Fabio ; Angione, Claudio.
PLOS Computational Biology.  19 (2023)  7 - p. e1011224 , 2023
Link: https://doi.org/10.1371/..
 
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9

Maternal and food microbial sources shape the infant microb..:

Manara, Serena ; Selma-Royo, Marta ; Huang, Kun D....
Current Biology.  33 (2023)  10 - p. 1939-1950.e4 , 2023
Link: https://doi.org/10.1016/..
 
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10

hdlib: A Python library for designing Vector-SymbolicArchit..:

Cumbo, Fabio ; Weitschek, Emanuel ; Blankenberg, Daniel
Journal of Open Source Software.  8 (2023)  89 - p. 5704 , 2023
Link: https://doi.org/10.21105..
 
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11

Population-level impacts of antibiotic usage on the human g..:

Lee, Kihyun ; Raguideau, Sebastien ; Sirén, Kimmo...
Nature Communications.  14 (2023)  1 - p. , 2023
Link: https://doi.org/10.1038/..
 
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12

The person-to-person transmission landscape of the gut and ..:

Valles-Colomer, Mireia ; Blanco-Míguez, Aitor ; Manghi, Paolo...
Nature.  614 (2023)  7946 - p. 125-135 , 2023
Link: https://doi.org/10.1038/..
 
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13

Intestinal Akkermansia muciniphila predicts clinical respon..:

Derosa, Lisa ; Routy, Bertrand ; Thomas, Andrew Maltez...
Nature Medicine.  28 (2022)  2 - p. 315-324 , 2022
Link: https://doi.org/10.1038/..
 
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14

Evaluating homophily in networks via HONTO (HOmophily Netwo..:

Apollonio, Nicola ; Blankenberg, Daniel ; Cumbo, Fabio..
Bioinformatics.  39 (2022)  1 - p. , 2022
Link: https://doi.org/10.1093/..
 
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15

Outer Membrane Vesicles From The Gut Microbiome Contribute ..:

Tomasi, Michele ; Caproni, Elena ; Benedet, Mattia...
Frontiers in Oncology.  12 (2022)  - p. , 2022
Link: https://doi.org/10.3389/..
 
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