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Cunial, Fabio
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1

Genome-scale algorithm design 

bioinformatics in the era of high-throughput sequencing 
Mäkinen, Veli ; Belazzougui, Djamal ; Tomescu, Alexandru I.. - Second edition. . , 2023
Link: https://doi.org/10.1017/..
 
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2

Cue: a deep-learning framework for structural variant disco..:

Popic, Victoria ; Rohlicek, Chris ; Cunial, Fabio...
Nature Methods.  , 2023
Link: https://doi.org/10.1038/..
 
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3

Fast and compact matching statistics analytics:

Cunial, Fabio ; Denas, Olgert ; Belazzougui, Djamal.
Bioinformatics.  38 (2022)  7 - p. 1838-1845 , 2022
Link: https://doi.org/10.1093/..
 
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4

Linear-time String Indexing and Analysis in Small Space:

Belazzougui, Djamal ; Cunial, Fabio ; Kärkkäinen, Juha.
ACM Transactions on Algorithms.  16 (2020)  2 - p. 1-54 , 2020
Link: https://doi.org/10.1145/..
 
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5

Linear-time String Indexing and Analysis in Small Space:

Belazzougui, Djamal ; Cunial, Fabio ; Kärkkäinen, Juha.
ACM Transactions on Algorithms (TALG).  16 (2020)  2 - p. 1-54 , 2020
Link: https://dl.acm.org/doi/1..
 
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6

Smaller Fully-Functional Bidirectional BWT Indexes:

, In: String Processing and Information Retrieval; Lecture Notes in Computer Science,
Belazzougui, Djamal ; Cunial, Fabio - p. 42-59 , 2020
Link: https://doi.org/10.1007/..
 
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7

A framework for space-efficient read clustering in metageno..:

Alanko, Jarno ; Cunial, Fabio ; Belazzougui, Djamal.
BMC Bioinformatics.  18 (2017)  S3 - p. , 2017
Link: https://doi.org/10.1186/..
 
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8

A Framework for Space-Efficient String Kernels:

Belazzougui, Djamal ; Cunial, Fabio
Algorithmica.  79 (2017)  3 - p. 857-883 , 2017
Link: https://doi.org/10.1007/..
 
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9

Genome-Scale Algorithm Design 

Biological Sequence Analysis in the Era of High-Throughput ... 
Mäkinen, Veli ; Belazzougui, Djamal ; Cunial, Fabio. , 2015
Link: https://doi.org/10.1017/..
 
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10

LAF: Logic Alignment Free and its application to bacterial ..:

Weitschek, Emanuel ; Cunial, Fabio ; Felici, Giovanni
BioData Mining.  8 (2015)  1 - p. , 2015
Link: https://doi.org/10.1186/..
 
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11

The subsequence composition of a string:

Apostolico, Alberto ; Cunial, Fabio
Theoretical Computer Science.  410 (2009)  43 - p. 4360-4371 , 2009
Link: https://doi.org/10.1016/..
 
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12

Cue: a deep learning framework for structural variant disco..:

Popic, Victoria ; Rohlicek, Chris ; Cunial, Fabio...
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10152467/.  , 2023
Link: http://www.ncbi.nlm.nih...
 
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13

Linear-time String Indexing and Analysis in Small Space:

Belazzougui, Djamal ; Cunial, Fabio ; Karkkainen, Juha.
10.1145/3381417.  , 2021
Link: http://hdl.handle.net/10..
 
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14

Fully-functional bidirectional Burrows-Wheeler indexes:

Cunial, Fabio ; Belazzougui, Djamal
http://arxiv.org/abs/1901.10165.  , 2019
Link: http://arxiv.org/abs/190..
 
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15

Fully-Functional Bidirectional Burrows-Wheeler Indexes and ..:

Belazzougui, Djamal ; Cunial, Fabio
doi:10.4230/LIPIcs.CPM.2019.10.  , 2019
Link: https://doi.org/10.4230/..
 
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