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1

Biologically meaningful genome interpretation models to add..:

Raimondi, Daniele ; Passemiers, Antoine ; Verplaetse, Nora...
Scientific Reports. 14 (2024) 1 - p. , 2024

Link: https://doi.org/10.1038/..

2

Data-driven probabilistic definition of the low energy conf..:

Gavalda-Garcia, Jose ; Bickel, David ; Roca-Martinez, Joel...
NAR Genomics and Bioinformatics. 6 (2024) 3 - p. , 2024

Link: https://doi.org/10.1093/..

3

Gene regulatory network analysis identifies MYL1, MDH2, GLS..:

Nourisa, Jalil ; Passemiers, Antoine ; Shakeri, Farhad...
Computational and Structural Biotechnology Journal. 23 (2024) - p. 1773-1785 , 2024

Link: https://doi.org/10.1016/..

4

Nonlinear data fusion over Entity–Relation graphs for Drug–..:

Mazzone, Eugenio ; Moreau, Yves ; Fariselli, Piero..
Bioinformatics. 39 (2023) 6 - p. , 2023

Link: https://doi.org/10.1093/..

5

Genome interpretation in a federated learning context allow..:

Raimondi, Daniele ; Chizari, Haleh ; Verplaetse, Nora...
Scientific Reports. 13 (2023) 1 - p. , 2023

Link: https://doi.org/10.1038/..

6

Large sample size and nonlinear sparse models outline epist..:

Verplaetse, Nora ; Passemiers, Antoine ; Arany, Adam..
Genome Biology. 24 (2023) 1 - p. , 2023

Link: https://doi.org/10.1186/..

7

Prediction of Disordered Regions in Proteins with Recurrent..:

Orlando, Gabriele ; Raimondi, Daniele ; Codicè, Francesco..
Journal of Molecular Biology. 434 (2022) 12 - p. 167579 , 2022

Link: https://doi.org/10.1016/..

8

HPMPdb: A machine learning-ready database of protein molecu..:

Raimondi, Daniele ; Codicè, Francesco ; Orlando, Gabriele...
Current Research in Structural Biology. 4 (2022) - p. 167-174 , 2022

Link: https://doi.org/10.1016/..

9

Editorial: Towards genome interpretation: Computational met..:

Raimondi, Daniele ; Orlando, Gabriele ; Verplaetse, Nora..
Frontiers in Bioinformatics. 2 (2022) - p. , 2022

Link: https://doi.org/10.3389/..

10

PyUUL provides an interface between biological structures a..:

Orlando, Gabriele ; Raimondi, Daniele ; Duran-Romaña, Ramon...
Nature Communications. 13 (2022) 1 - p. , 2022

Link: https://doi.org/10.1038/..

11

Fast and accurate inference of gene regulatory networks thr..:

Passemiers, Antoine ; Moreau, Yves ; Raimondi, Daniele.
Bioinformatics. 38 (2022) 10 - p. 2802-2809 , 2022

Link: https://doi.org/10.1093/..

12

From genotype to phenotype inArabidopsis thaliana:in-silico..:

Raimondi, Daniele ; Corso, Massimiliano ; Fariselli, Piero.
Nucleic Acids Research. 50 (2021) 3 - p. e16-e16 , 2021

Link: https://doi.org/10.1093/..

13

b2bTools: online predictions for protein biophysical featur..:

Kagami, Luciano Porto ; Orlando, Gabriele ; Raimondi, Daniele...
Nucleic Acids Research. 49 (2021) W1 - p. W52-W59 , 2021

Link: https://doi.org/10.1093/..

14

Current cancer driver variant predictors learn to recognize..:

Raimondi, Daniele ; Passemiers, Antoine ; Fariselli, Piero.
BMC Biology. 19 (2021) 1 - p. , 2021

Link: https://doi.org/10.1186/..

15

Critical assessment of protein intrinsic disorder predictio:

Necci, Marco ; Piovesan, Damiano ; Hoque, Md Tamjidul...
Nature Methods. 18 (2021) 5 - p. 472-481 , 2021

Link: https://doi.org/10.1038/..

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