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1

Coarse-Grained Modeling of the Interplay between Secondary ..:

Dawid, Aleksandra E. ; Gront, Dominik ; Kolinski, Andrzej
Journal of Chemical Theory and Computation. 14 (2018) 4 - p. 2277-2287 , 2018

Link: https://doi.org/10.1021/..

2

SURPASS Low-Resolution Coarse-Grained Protein Modeling:

Dawid, Aleksandra E. ; Gront, Dominik ; Kolinski, Andrzej
Journal of Chemical Theory and Computation. 13 (2017) 11 - p. 5766-5779 , 2017

Link: https://doi.org/10.1021/..

3

A3D Model Organism Database (A3D-MODB): a database for prot..:

Badaczewska-Dawid, Aleksandra E ; Kuriata, Aleksander ; Pintado-Grima, Carlos...
Nucleic Acids Research. 52 (2023) D1 - p. D360-D367 , 2023

Link: https://doi.org/10.1093/..

4

A3DyDB: exploring structural aggregation propensities in th..:

Garcia-Pardo, Javier ; Badaczewska-Dawid, Aleksandra E. ; Pintado-Grima, Carlos...
Microbial Cell Factories. 22 (2023) 1 - p. , 2023

Link: https://doi.org/10.1186/..

5

MAPIYA contact map server for identification and visualizat..:

Badaczewska-Dawid, Aleksandra E ; Nithin, Chandran ; Wroblewski, Karol..
Nucleic Acids Research. 50 (2022) W1 - p. W474-W482 , 2022

Link: https://doi.org/10.1093/..

6

BioShell 3.0: Library for Processing Structural Biology Dat:

Macnar, Joanna M. ; Szulc, Natalia A. ; Kryś, Justyna D...
Biomolecules. 10 (2020) 3 - p. 461 , 2020

Link: https://doi.org/10.3390/..

7

Docking of peptides to GPCRs using a combination of CABS-do..:

Badaczewska-Dawid, Aleksandra E ; Kmiecik, Sebastian ; Koliński, Michał
Briefings in Bioinformatics. 22 (2020) 3 - p. , 2020

Link: https://doi.org/10.1093/..

8

HaDeX: an R package and web-server for analysis of data fro..:

Puchała, Weronika ; Burdukiewicz, Michał ; Kistowski, Michał...
Bioinformatics. 36 (2020) 16 - p. 4516-4518 , 2020

Link: https://doi.org/10.1093/..

9

Computational reconstruction of atomistic protein structure..:

Badaczewska-Dawid, Aleksandra E. ; Kolinski, Andrzej ; Kmiecik, Sebastian
Computational and Structural Biotechnology Journal. 18 (2020) - p. 162-176 , 2020

Link: https://doi.org/10.1016/..

10

CABS-dock standalone: a toolbox for flexible protein–peptid..:

Kurcinski, Mateusz ; Pawel Ciemny, Maciej ; Oleniecki, Tymoteusz...
Bioinformatics. 35 (2019) 20 - p. 4170-4172 , 2019

Link: https://doi.org/10.1093/..

11

Modeling of Protein Structural Flexibility and Large-Scale ..:

Kmiecik, Sebastian ; Kouza, Maksim ; Badaczewska-Dawid, Aleksandra E...
International Journal of Molecular Sciences. 19 (2018) 11 - p. 3496 , 2018

Link: https://doi.org/10.3390/..

12

IMPLEMENTATION AND EVALUATION OF NEW PROTOCOL FOR COMPARATI..:

MARTA STRUMILLO ; ALEKSANDRA E. DAWID ; AGATA SZCZASIUK.
https://journal.mostwiedzy.pl/TASKQuarterly/article/view/1902. , 2014

Link: https://doi.org/10.17466..

13

A3DyDB: exploring structural aggregation propensities in th..:

Javier Garcia-Pardo ; Aleksandra E. Badaczewska-Dawid ; Carlos Pintado-Grima...
https://doi.org/10.1186/s12934-023-02182-3. , 2023

Link: https://doi.org/10.1186/..

14

BIAPSS: A Comprehensive Physicochemical Analyzer of Protein..:

Aleksandra E. Badaczewska-Dawid ; Vladimir N. Uversky ; Davit A. Potoyan
https://www.mdpi.com/1422-0067/23/11/6204. , 2022

Link: https://doi.org/10.3390/..

15

Computational reconstruction of atomistic protein structure..:

Aleksandra E. Badaczewska-Dawid ; Andrzej Kolinski ; Sebastian Kmiecik
http://www.sciencedirect.com/science/article/pii/S2001037019305537. , 2020

Link: https://doi.org/10.1016/..

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