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DeMaere, Matthew Z.
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1

Assessing how metal reef restoration structures shape the f..:

Strudwick, Paige ; Suggett, David J. ; Seymour, Justin R....
Frontiers in Marine Science.  11 (2024)  - p. , 2024
Link: https://doi.org/10.3389/..
 
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2

Rhometa: Population recombination rate estimation from meta..:

Krishnan, Sidaswar ; DeMaere, Matthew Z. ; Beck, Dominik...
PLOS Genetics.  19 (2023)  3 - p. e1010683 , 2023
Link: https://doi.org/10.1371/..
 
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3

Phylogenetic diversity analysis of shotgun metagenomic read..:

Gaio, Daniela ; DeMaere, Matthew Z. ; Anantanawat, Kay...
PLOS ONE.  17 (2022)  6 - p. e0270372 , 2022
Link: https://doi.org/10.1371/..
 
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4

Post-weaning shifts in microbiome composition and metabolis..:

Gaio, Daniela ; DeMaere, Matthew Z. ; Anantanawat, Kay...
Microbial Genomics.  7 (2021)  8 - p. , 2021
Link: https://doi.org/10.1099/..
 
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5

qc3C: Reference-free quality control for Hi-C sequencing da..:

DeMaere, Matthew Z. ; Darling, Aaron E. ; Pertea, Mihaela
PLOS Computational Biology.  17 (2021)  10 - p. e1008839 , 2021
Link: https://doi.org/10.1371/..
 
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6

A large-scale metagenomic survey dataset of the post-weanin..:

Gaio, Daniela ; DeMaere, Matthew Z ; Anantanawat, Kay...
GigaScience.  10 (2021)  6 - p. , 2021
Link: https://doi.org/10.1093/..
 
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7

Metagenomic Hi-C of a Healthy Human Fecal Microbiome Transp..:

DeMaere, Matthew Z. ; Liu, Michael Y. Z. ; Lin, Enmoore...
Microbiology Resource Announcements.  9 (2020)  6 - p. , 2020
Link: https://doi.org/10.1128/..
 
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8

High contiguity genome sequence of a multidrug-resistant ho..:

Monahan, Leigh G. ; DeMaere, Matthew Z. ; Cummins, Max L....
Gut Pathogens.  11 (2019)  1 - p. , 2019
Link: https://doi.org/10.1186/..
 
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9

Australian porcine clonal complex 10 (CC10) Escherichia col..:

Reid, Cameron J. ; DeMaere, Matthew Z. ; Djordjevic, Steven P.
Microbial Genomics.  5 (2019)  3 - p. , 2019
Link: https://doi.org/10.1099/..
 
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10

Identification of a novel lineage of plasmids within phylog..:

Roy Chowdhury, Piklu ; Fourment, Mathieu ; DeMaere, Matthew Z....
Plasmid.  102 (2019)  - p. 56-61 , 2019
Link: https://doi.org/10.1016/..
 
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11

CAMISIM: simulating metagenomes and microbial communities:

Fritz, Adrian ; Hofmann, Peter ; Majda, Stephan...
Microbiome.  7 (2019)  1 - p. , 2019
Link: https://doi.org/10.1186/..
 
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12

Complete Sequences of Multiple-Drug Resistant IncHI2 ST3 Pl..:

Wyrsch, Ethan R. ; Reid, Cameron J. ; DeMaere, Matthew Z....
Frontiers in Sustainable Food Systems.  3 (2019)  - p. , 2019
Link: https://doi.org/10.3389/..
 
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13

bin3C: exploiting Hi-C sequencing data to accurately resolv..:

DeMaere, Matthew Z. ; Darling, Aaron E.
Genome Biology.  20 (2019)  1 - p. , 2019
Link: https://doi.org/10.1186/..
 
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14

Genomic variation and biogeography of Antarctic haloarchaea:

Tschitschko, Bernhard ; Erdmann, Susanne ; DeMaere, Matthew Z....
Microbiome.  6 (2018)  1 - p. , 2018
Link: https://doi.org/10.1186/..
 
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15

Critical Assessment of Metagenome Interpretation—a benchmar..:

Sczyrba, Alexander ; Hofmann, Peter ; Belmann, Peter...
Nature Methods.  14 (2017)  11 - p. 1063-1071 , 2017
Link: https://doi.org/10.1038/..
 
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