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Doye, Jonathan P.K.
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1

Coarse-grained modeling of DNA–RNA hybrids:

Ratajczyk, Eryk J. ; Šulc, Petr ; Turberfield, Andrew J...
The Journal of Chemical Physics.  160 (2024)  11 - p. , 2024
Link: https://doi.org/10.1063/..
 
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2

Simulation of reversible molecular mechanical logic gates a..:

Seet, Ian ; Ouldridge, Thomas E. ; Doye, Jonathan P. K.
Physical Review E.  107 (2023)  2 - p. , 2023
Link: https://doi.org/10.1103/..
 
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3

Symmetry and simplicity spontaneously emerge from the algor..:

Johnston, Iain G. ; Dingle, Kamaludin ; Greenbury, Sam F....
Proceedings of the National Academy of Sciences.  119 (2022)  11 - p. , 2022
Link: https://doi.org/10.1073/..
 
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4

The Free-Energy Landscape of a Mechanically Bistable DNA Or..:

Wong, Chak Kui ; Doye, Jonathan P. K.
Applied Sciences.  12 (2022)  12 - p. 5875 , 2022
Link: https://doi.org/10.3390/..
 
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5

Characterizing the free-energy landscapes of DNA origamis:

Wong, Chak Kui ; Tang, Chuyan ; Schreck, John S..
Nanoscale.  14 (2022)  7 - p. 2638-2648 , 2022
Link: https://doi.org/10.1039/..
 
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6

The interplay of supercoiling and thymine dimers in DNA:

Lim, Wilber ; Randisi, Ferdinando ; Doye, Jonathan P K.
Nucleic Acids Research.  50 (2022)  5 - p. 2480-2492 , 2022
Link: https://doi.org/10.1093/..
 
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7

Free energy landscapes of DNA and its assemblies: perspecti..:

, In: Frontiers of Nanoscience; Energy Landscapes of Nanoscale Systems,
Doye, Jonathan P.K. ; Louis, Ard A. ; Schreck, John S.... - p. 195-210 , 2022
Link: https://doi.org/10.1016/..
 
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8

Reply to Ocklenburg and Mundorf: The interplay of developme..:

Johnston, Iain G. ; Dingle, Kamaludin ; Greenbury, Sam F....
Proceedings of the National Academy of Sciences.  119 (2022)  28 - p. , 2022
Link: https://doi.org/10.1073/..
 
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9

Computational explorations in the space of one-component cr..:

Doye, Jonathan P. K. ; Noya, Eva G.
Proceedings of the National Academy of Sciences.  118 (2021)  23 - p. , 2021
Link: https://doi.org/10.1073/..
 
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10

Massively Parallelized Molecular Force Manipulation with On..:

Su, Hanquan ; Brockman, Joshua M. ; Duan, Yuxin...
Journal of the American Chemical Society.  143 (2021)  46 - p. 19466-19473 , 2021
Link: https://doi.org/10.1021/..
 
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11

How to design an icosahedral quasicrystal through direction..:

Noya, Eva G. ; Wong, Chak Kui ; Llombart, Pablo.
Nature.  596 (2021)  7872 - p. 367-371 , 2021
Link: https://doi.org/10.1038/..
 
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12

Programming patchy particles to form three-dimensional dode..:

Tracey, Daniel F. ; Noya, Eva G. ; Doye, Jonathan P. K.
The Journal of Chemical Physics.  154 (2021)  19 - p. , 2021
Link: https://doi.org/10.1063/..
 
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13

Computing the Elastic Mechanical Properties of Rodlike DNA ..:

Chhabra, Hemani ; Mishra, Garima ; Cao, Yijing...
Journal of Chemical Theory and Computation.  16 (2020)  12 - p. 7748-7763 , 2020
Link: https://doi.org/10.1021/..
 
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14

Reconfigurable T‐junction DNA Origami:

Young, Katherine G. ; Najafi, Behnam ; Sant, William M....
Angewandte Chemie International Edition.  59 (2020)  37 - p. 15942-15946 , 2020
Link: https://doi.org/10.1002/..
 
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15

Chiral shape fluctuations and the origin of chirality in ch..:

Tortora, Maxime M. C. ; Mishra, Garima ; Prešern, Domen.
Science Advances.  6 (2020)  31 - p. , 2020
Link: https://doi.org/10.1126/..
 
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